Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC188H7C350 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
CCDC188H7C350 AC007322.3-201ENST00000426526 701 ntBASIC20.95■□□□□ 0.94
CCDC188H7C350 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC20.95■□□□□ 0.94
CCDC188H7C350 DUX4L2-201ENST00000561772 1275 ntBASIC20.95■□□□□ 0.94
CCDC188H7C350 FAM21FP-204ENST00000608637 956 ntBASIC20.95■□□□□ 0.94
CCDC188H7C350 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC20.95■□□□□ 0.94
CCDC188H7C350 DUX4L6-201ENST00000626483 1275 ntBASIC20.95■□□□□ 0.94
CCDC188H7C350 DUX4L1-201ENST00000627662 1275 ntBASIC20.95■□□□□ 0.94
CCDC188H7C350 DUX4L8-201ENST00000629013 1275 ntBASIC20.95■□□□□ 0.94
CCDC188H7C350 DUX4L3-201ENST00000630187 1275 ntBASIC20.95■□□□□ 0.94
CCDC188H7C350 DUX4L7-201ENST00000630678 1275 ntBASIC20.95■□□□□ 0.94
CCDC188H7C350 DUX4L5-201ENST00000630834 1275 ntBASIC20.95■□□□□ 0.94
CCDC188H7C350 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC188H7C350 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC188H7C350 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
CCDC188H7C350 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC188H7C350 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
CCDC188H7C350 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC20.95■□□□□ 0.94
CCDC188H7C350 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC188H7C350 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC188H7C350 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC20.94■□□□□ 0.94
CCDC188H7C350 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
CCDC188H7C350 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC188H7C350 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC188H7C350 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC188H7C350 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC20.94■□□□□ 0.94
CCDC188H7C350 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
CCDC188H7C350 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
CCDC188H7C350 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC188H7C350 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC188H7C350 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC20.94■□□□□ 0.94
CCDC188H7C350 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC20.94■□□□□ 0.94
CCDC188H7C350 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC188H7C350 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC188H7C350 AC091799.1-201ENST00000422823 811 ntBASIC20.94■□□□□ 0.94
CCDC188H7C350 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC188H7C350 SLC7A5P2-201ENST00000553010 536 ntBASIC20.94■□□□□ 0.94
CCDC188H7C350 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC188H7C350 AC243732.1-201ENST00000612648 864 ntBASIC20.94■□□□□ 0.94
CCDC188H7C350 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC188H7C350 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC188H7C350 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC188H7C350 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC20.94■□□□□ 0.94
CCDC188H7C350 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC188H7C350 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC188H7C350 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC188H7C350 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC188H7C350 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC20.94■□□□□ 0.94
CCDC188H7C350 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC188H7C350 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC20.94■□□□□ 0.94
CCDC188H7C350 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC188H7C350 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC20.93■□□□□ 0.94
CCDC188H7C350 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC188H7C350 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC188H7C350 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC20.93■□□□□ 0.94
CCDC188H7C350 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC188H7C350 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC188H7C350 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC20.93■□□□□ 0.94
CCDC188H7C350 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
CCDC188H7C350 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC20.93■□□□□ 0.94
CCDC188H7C350 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC20.93■□□□□ 0.94
CCDC188H7C350 AL136967.2-201ENST00000623968 743 ntBASIC20.93■□□□□ 0.94
CCDC188H7C350 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC20.93■□□□□ 0.94
CCDC188H7C350 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC20.93■□□□□ 0.94
CCDC188H7C350 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC20.93■□□□□ 0.94
CCDC188H7C350 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC188H7C350 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC188H7C350 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC188H7C350 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC188H7C350 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC20.93■□□□□ 0.94
CCDC188H7C350 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC188H7C350 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC188H7C350 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC188H7C350 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC188H7C350 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC20.92■□□□□ 0.94
CCDC188H7C350 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
CCDC188H7C350 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC188H7C350 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC188H7C350 IRS3P-201ENST00000223076 1006 ntBASIC20.92■□□□□ 0.94
CCDC188H7C350 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC188H7C350 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC188H7C350 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC20.92■□□□□ 0.94
CCDC188H7C350 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
CCDC188H7C350 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
CCDC188H7C350 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC188H7C350 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC188H7C350 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC188H7C350 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC20.92■□□□□ 0.94
CCDC188H7C350 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC20.92■□□□□ 0.94
CCDC188H7C350 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC188H7C350 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC188H7C350 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC188H7C350 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC188H7C350 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC188H7C350 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC188H7C350 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC188H7C350 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC188H7C350 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC188H7C350 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC20.91■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms