Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 CBFA2T2-210ENST00000543126 3502 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
LRCH3Q96II8 SEC16A-204ENST00000313084 3073 ntAPPRIS ALT2 TSL 2 BASIC9.97□□□□□ -0.81
LRCH3Q96II8 ZSCAN31-209ENST00000439158 3050 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
LRCH3Q96II8 AL022100.1-201ENST00000636624 1678 ntTSL 5 BASIC9.97□□□□□ -0.81
LRCH3Q96II8 DKK2-201ENST00000285311 3638 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
LRCH3Q96II8 AL603750.1-201ENST00000624216 1717 ntBASIC9.97□□□□□ -0.81
LRCH3Q96II8 PLG-202ENST00000308192 2741 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
LRCH3Q96II8 JAM2-206ENST00000480456 4337 ntAPPRIS P3 TSL 1 (best) BASIC9.97□□□□□ -0.81
LRCH3Q96II8 ARL5C-201ENST00000269586 540 ntAPPRIS P1 TSL 5 BASIC9.97□□□□□ -0.81
LRCH3Q96II8 DEFB104A-201ENST00000314265 281 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
LRCH3Q96II8 DEFB104B-201ENST00000316169 281 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
LRCH3Q96II8 SIRPG-203ENST00000344103 1042 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
LRCH3Q96II8 Y_RNA.359-201ENST00000365498 102 ntBASIC9.97□□□□□ -0.81
LRCH3Q96II8 TRBV6-1-201ENST00000390353 401 ntAPPRIS P1 BASIC9.97□□□□□ -0.81
LRCH3Q96II8 AC136624.1-201ENST00000400791 413 ntBASIC9.97□□□□□ -0.81
LRCH3Q96II8 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC9.97□□□□□ -0.81
LRCH3Q96II8 SETP22-201ENST00000412243 957 ntBASIC9.97□□□□□ -0.81
LRCH3Q96II8 KCNIP2-AS1-201ENST00000412353 850 ntTSL 2 BASIC9.97□□□□□ -0.81
LRCH3Q96II8 AC245884.5-201ENST00000417373 170 ntBASIC9.97□□□□□ -0.81
LRCH3Q96II8 AL138828.1-207ENST00000417643 734 ntTSL 5 BASIC9.97□□□□□ -0.81
LRCH3Q96II8 MRPS36P1-201ENST00000421291 307 ntBASIC9.97□□□□□ -0.81
LRCH3Q96II8 AL391704.3-201ENST00000425365 831 ntTSL 3 BASIC9.97□□□□□ -0.81
LRCH3Q96II8 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC9.97□□□□□ -0.81
LRCH3Q96II8 LINC01449-201ENST00000440213 1220 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
LRCH3Q96II8 AL139121.1-201ENST00000445647 244 ntTSL 2 BASIC9.97□□□□□ -0.81
LRCH3Q96II8 AC002064.1-201ENST00000445784 733 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
LRCH3Q96II8 CASP3P1-201ENST00000446037 609 ntBASIC9.97□□□□□ -0.81
LRCH3Q96II8 AC006019.3-201ENST00000446335 698 ntTSL 3 BASIC9.97□□□□□ -0.81
LRCH3Q96II8 KIAA1456-202ENST00000447063 983 ntTSL 2 BASIC9.97□□□□□ -0.81
LRCH3Q96II8 KCNMB2-AS1-205ENST00000451742 844 ntTSL 4 BASIC9.97□□□□□ -0.81
LRCH3Q96II8 RPL5P32-201ENST00000454085 879 ntBASIC9.97□□□□□ -0.81
LRCH3Q96II8 RN7SL587P-201ENST00000459853 281 ntBASIC9.97□□□□□ -0.81
LRCH3Q96II8 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC9.97□□□□□ -0.81
LRCH3Q96II8 RN7SL314P-201ENST00000490735 292 ntBASIC9.97□□□□□ -0.81
LRCH3Q96II8 AC092666.1-203ENST00000495144 698 ntTSL 5 BASIC9.97□□□□□ -0.81
LRCH3Q96II8 AC117522.3-201ENST00000507974 584 ntBASIC9.97□□□□□ -0.81
LRCH3Q96II8 SNX18P25-201ENST00000510539 758 ntBASIC9.97□□□□□ -0.81
LRCH3Q96II8 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC9.97□□□□□ -0.81
LRCH3Q96II8 SUMO2P19-201ENST00000518920 295 ntBASIC9.97□□□□□ -0.81
LRCH3Q96II8 IGLV3-29-201ENST00000520084 244 ntBASIC9.97□□□□□ -0.81
LRCH3Q96II8 AC013643.2-201ENST00000521510 584 ntTSL 4 BASIC9.97□□□□□ -0.81
LRCH3Q96II8 CENPUP1-201ENST00000526649 1202 ntBASIC9.97□□□□□ -0.81
LRCH3Q96II8 AC090458.1-203ENST00000527757 546 ntTSL 3 BASIC9.97□□□□□ -0.81
LRCH3Q96II8 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC9.97□□□□□ -0.81
LRCH3Q96II8 UBC-213ENST00000546120 718 ntTSL 5 BASIC9.97□□□□□ -0.81
LRCH3Q96II8 ELOCP32-201ENST00000548625 324 ntBASIC9.97□□□□□ -0.81
LRCH3Q96II8 AL157871.6-201ENST00000553954 206 ntTSL 2 BASIC9.97□□□□□ -0.81
LRCH3Q96II8 AL133167.1-201ENST00000554889 806 ntTSL 2 BASIC9.97□□□□□ -0.81
LRCH3Q96II8 AC087639.1-201ENST00000560974 920 ntBASIC9.97□□□□□ -0.81
LRCH3Q96II8 AC243312.1-201ENST00000570582 275 ntBASIC9.97□□□□□ -0.81
LRCH3Q96II8 AC114488.2-207ENST00000585660 700 ntTSL 5 BASIC9.97□□□□□ -0.81
LRCH3Q96II8 AC090181.2-201ENST00000602975 672 ntBASIC9.97□□□□□ -0.81
LRCH3Q96II8 AC087045.1-201ENST00000605856 382 ntBASIC9.97□□□□□ -0.81
LRCH3Q96II8 AC024060.1-201ENST00000607052 494 ntBASIC9.97□□□□□ -0.81
LRCH3Q96II8 AC093388.1-201ENST00000609166 430 ntBASIC9.97□□□□□ -0.81
LRCH3Q96II8 Z99129.1-201ENST00000612510 255 ntBASIC9.97□□□□□ -0.81
LRCH3Q96II8 AC023310.4-201ENST00000613130 650 ntBASIC9.97□□□□□ -0.81
LRCH3Q96II8 RSU1P2-204ENST00000619977 1240 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
LRCH3Q96II8 Metazoa_SRP.190-201ENST00000620330 287 ntBASIC9.97□□□□□ -0.81
LRCH3Q96II8 AP002505.2-201ENST00000623585 696 ntBASIC9.97□□□□□ -0.81
LRCH3Q96II8 LINC01176-202ENST00000628121 716 ntTSL 3 BASIC9.97□□□□□ -0.81
LRCH3Q96II8 LINC01358-208ENST00000634569 1030 ntTSL 5 BASIC9.97□□□□□ -0.81
LRCH3Q96II8 OR10R2-203ENST00000641400 975 ntAPPRIS ALT2 BASIC9.97□□□□□ -0.81
LRCH3Q96II8 DNAJC6-202ENST00000371069 5365 ntAPPRIS P4 TSL 1 (best) BASIC9.97□□□□□ -0.81
LRCH3Q96II8 ERMARD-205ENST00000418781 1841 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
LRCH3Q96II8 CARF-216ENST00000444724 2854 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
LRCH3Q96II8 DHRS9-208ENST00000602501 2863 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
LRCH3Q96II8 AC138470.1-201ENST00000624638 1897 ntBASIC9.97□□□□□ -0.81
LRCH3Q96II8 FANCB-202ENST00000398334 3008 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
LRCH3Q96II8 LINC02426-201ENST00000550506 1372 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
LRCH3Q96II8 TTLL6-205ENST00000433608 2548 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
LRCH3Q96II8 RNPC3-202ENST00000524631 2013 ntAPPRIS ALT1 TSL 2 BASIC9.97□□□□□ -0.81
LRCH3Q96II8 ZMYND8-205ENST00000360911 4991 ntAPPRIS ALT2 TSL 1 (best) BASIC9.97□□□□□ -0.81
LRCH3Q96II8 AGBL4-202ENST00000371836 1454 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
LRCH3Q96II8 MCF2-209ENST00000520602 3945 ntAPPRIS ALT2 TSL 5 BASIC9.97□□□□□ -0.81
LRCH3Q96II8 ZNF347-207ENST00000601469 2812 ntAPPRIS ALT2 TSL 2 BASIC9.97□□□□□ -0.81
LRCH3Q96II8 CATSPER2P1-204ENST00000439564 1579 ntBASIC9.97□□□□□ -0.81
LRCH3Q96II8 IFT122-210ENST00000504021 3541 ntTSL 2 BASIC9.96□□□□□ -0.81
LRCH3Q96II8 ELF5-205ENST00000532417 2330 ntTSL 2 BASIC9.96□□□□□ -0.81
LRCH3Q96II8 RALGDS-204ENST00000393157 3689 ntAPPRIS ALT2 TSL 2 BASIC9.96□□□□□ -0.81
LRCH3Q96II8 SPTBN1-201ENST00000333896 9075 ntTSL 1 (best) BASIC9.96□□□□□ -0.81
LRCH3Q96II8 NCAPD3-214ENST00000534548 5061 ntAPPRIS P2 TSL 1 (best) BASIC9.96□□□□□ -0.81
LRCH3Q96II8 ZNF37BP-202ENST00000452075 8637 ntTSL 2 BASIC9.96□□□□□ -0.81
LRCH3Q96II8 FAM13A-212ENST00000508369 3169 ntTSL 5 BASIC9.96□□□□□ -0.81
LRCH3Q96II8 SEPT4-206ENST00000457347 1795 ntAPPRIS ALT2 TSL 2 BASIC9.96□□□□□ -0.81
LRCH3Q96II8 OR5BA1P-202ENST00000641215 5464 ntBASIC9.96□□□□□ -0.81
LRCH3Q96II8 CD274-201ENST00000381573 3343 ntTSL 5 BASIC9.96□□□□□ -0.81
LRCH3Q96II8 SCN5A-203ENST00000413689 8504 ntAPPRIS ALT1 TSL 5 BASIC9.96□□□□□ -0.81
LRCH3Q96II8 ACTG1P9-201ENST00000457622 2658 ntBASIC9.96□□□□□ -0.81
LRCH3Q96II8 ABI1-205ENST00000376139 3516 ntAPPRIS P2 TSL 1 (best) BASIC9.96□□□□□ -0.81
LRCH3Q96II8 GCM1-201ENST00000259803 2765 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.81
LRCH3Q96II8 NOP2-218ENST00000545200 2751 ntTSL 1 (best) BASIC9.96□□□□□ -0.81
LRCH3Q96II8 HIPK1-203ENST00000369553 2883 ntTSL 1 (best) BASIC9.96□□□□□ -0.81
LRCH3Q96II8 DDX11-202ENST00000350437 3724 ntTSL 1 (best) BASIC9.96□□□□□ -0.81
LRCH3Q96II8 EAF2-201ENST00000273668 992 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.82
LRCH3Q96II8 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.82
LRCH3Q96II8 RN7SKP243-201ENST00000363105 309 ntBASIC9.96□□□□□ -0.82
LRCH3Q96II8 RNA5SP74-201ENST00000363538 109 ntBASIC9.96□□□□□ -0.82
LRCH3Q96II8 MUC1-205ENST00000368389 543 ntTSL 1 (best) BASIC9.96□□□□□ -0.82
LRCH3Q96II8 ARR3-202ENST00000374495 1298 ntTSL 1 (best) BASIC9.96□□□□□ -0.82
Retrieved 100 of 98,524 protein–RNA pairs in 77.4 ms