Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
COL28A1Q2UY09 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
COL28A1Q2UY09 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
COL28A1Q2UY09 FBXW4P1-201ENST00000426721 2239 ntBASIC19.42■□□□□ 0.7
COL28A1Q2UY09 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL28A1Q2UY09 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
COL28A1Q2UY09 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
COL28A1Q2UY09 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL28A1Q2UY09 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC19.42■□□□□ 0.7
COL28A1Q2UY09 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
COL28A1Q2UY09 P4HB-223ENST00000576390 439 ntTSL 4 BASIC19.42■□□□□ 0.7
COL28A1Q2UY09 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL28A1Q2UY09 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
COL28A1Q2UY09 KLF2-202ENST00000592003 564 ntTSL 3 BASIC19.42■□□□□ 0.7
COL28A1Q2UY09 AC110285.5-201ENST00000611501 352 ntBASIC19.42■□□□□ 0.7
COL28A1Q2UY09 MIR6786-201ENST00000616843 113 ntBASIC19.42■□□□□ 0.7
COL28A1Q2UY09 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
COL28A1Q2UY09 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL28A1Q2UY09 CRK-204ENST00000574295 1391 ntTSL 5 BASIC19.42■□□□□ 0.7
COL28A1Q2UY09 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL28A1Q2UY09 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL28A1Q2UY09 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL28A1Q2UY09 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC19.42■□□□□ 0.7
COL28A1Q2UY09 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL28A1Q2UY09 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL28A1Q2UY09 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL28A1Q2UY09 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
COL28A1Q2UY09 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL28A1Q2UY09 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC19.41■□□□□ 0.7
COL28A1Q2UY09 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
COL28A1Q2UY09 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL28A1Q2UY09 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
COL28A1Q2UY09 THEM4-205ENST00000489410 643 ntTSL 2 BASIC19.41■□□□□ 0.7
COL28A1Q2UY09 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
COL28A1Q2UY09 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC19.41■□□□□ 0.7
COL28A1Q2UY09 FAM21FP-204ENST00000608637 956 ntBASIC19.41■□□□□ 0.7
COL28A1Q2UY09 AC026471.5-201ENST00000615068 467 ntBASIC19.41■□□□□ 0.7
COL28A1Q2UY09 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL28A1Q2UY09 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC19.41■□□□□ 0.7
COL28A1Q2UY09 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC19.41■□□□□ 0.7
COL28A1Q2UY09 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL28A1Q2UY09 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL28A1Q2UY09 GOLGA2P6-201ENST00000340929 2049 ntBASIC19.41■□□□□ 0.7
COL28A1Q2UY09 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
COL28A1Q2UY09 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL28A1Q2UY09 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL28A1Q2UY09 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL28A1Q2UY09 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL28A1Q2UY09 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL28A1Q2UY09 KRASP1-201ENST00000407852 552 ntBASIC19.4■□□□□ 0.7
COL28A1Q2UY09 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
COL28A1Q2UY09 AL121894.2-201ENST00000602977 491 ntBASIC19.4■□□□□ 0.7
COL28A1Q2UY09 BID-212ENST00000614949 1988 ntTSL 5 BASIC19.4■□□□□ 0.7
COL28A1Q2UY09 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL28A1Q2UY09 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
COL28A1Q2UY09 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
COL28A1Q2UY09 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
COL28A1Q2UY09 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.7
COL28A1Q2UY09 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC19.39■□□□□ 0.69
COL28A1Q2UY09 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL28A1Q2UY09 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
COL28A1Q2UY09 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
COL28A1Q2UY09 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC19.39■□□□□ 0.69
COL28A1Q2UY09 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC19.39■□□□□ 0.69
COL28A1Q2UY09 KRT18P57-201ENST00000443599 1254 ntBASIC19.39■□□□□ 0.69
COL28A1Q2UY09 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC19.39■□□□□ 0.69
COL28A1Q2UY09 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
COL28A1Q2UY09 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC19.39■□□□□ 0.69
COL28A1Q2UY09 AP003071.4-201ENST00000562276 1284 ntBASIC19.39■□□□□ 0.69
COL28A1Q2UY09 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC19.39■□□□□ 0.69
COL28A1Q2UY09 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
COL28A1Q2UY09 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL28A1Q2UY09 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC19.39■□□□□ 0.69
COL28A1Q2UY09 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
COL28A1Q2UY09 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC19.39■□□□□ 0.69
COL28A1Q2UY09 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC19.39■□□□□ 0.69
COL28A1Q2UY09 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC19.39■□□□□ 0.69
COL28A1Q2UY09 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC19.39■□□□□ 0.69
COL28A1Q2UY09 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL28A1Q2UY09 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC19.39■□□□□ 0.69
COL28A1Q2UY09 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL28A1Q2UY09 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC19.39■□□□□ 0.69
COL28A1Q2UY09 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC19.39■□□□□ 0.69
COL28A1Q2UY09 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC19.39■□□□□ 0.69
COL28A1Q2UY09 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL28A1Q2UY09 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL28A1Q2UY09 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC19.38■□□□□ 0.69
COL28A1Q2UY09 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL28A1Q2UY09 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL28A1Q2UY09 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL28A1Q2UY09 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
COL28A1Q2UY09 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL28A1Q2UY09 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL28A1Q2UY09 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL28A1Q2UY09 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
COL28A1Q2UY09 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL28A1Q2UY09 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
COL28A1Q2UY09 MCRIP2P1-201ENST00000394346 511 ntBASIC19.38■□□□□ 0.69
COL28A1Q2UY09 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC19.38■□□□□ 0.69
COL28A1Q2UY09 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms