Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLRN1P58418 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CLRN1P58418 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLRN1P58418 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLRN1P58418 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CLRN1P58418 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLRN1P58418 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
CLRN1P58418 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CLRN1P58418 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC18.05■□□□□ 0.48
CLRN1P58418 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
CLRN1P58418 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLRN1P58418 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC18.05■□□□□ 0.48
CLRN1P58418 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLRN1P58418 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CLRN1P58418 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC18.05■□□□□ 0.48
CLRN1P58418 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC18.05■□□□□ 0.48
CLRN1P58418 CYP2T1P-201ENST00000432607 1285 ntBASIC18.05■□□□□ 0.48
CLRN1P58418 IKBKGP1-201ENST00000612193 1073 ntBASIC18.05■□□□□ 0.48
CLRN1P58418 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC18.05■□□□□ 0.48
CLRN1P58418 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLRN1P58418 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLRN1P58418 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC18.05■□□□□ 0.48
CLRN1P58418 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLRN1P58418 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLRN1P58418 AC073130.3-201ENST00000624389 2278 ntBASIC18.05■□□□□ 0.48
CLRN1P58418 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC18.05■□□□□ 0.48
CLRN1P58418 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC18.05■□□□□ 0.48
CLRN1P58418 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLRN1P58418 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC18.04■□□□□ 0.48
CLRN1P58418 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC18.04■□□□□ 0.48
CLRN1P58418 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CLRN1P58418 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLRN1P58418 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
CLRN1P58418 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CLRN1P58418 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLRN1P58418 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLRN1P58418 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLRN1P58418 AC004911.1-201ENST00000416316 871 ntBASIC18.04■□□□□ 0.48
CLRN1P58418 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC18.04■□□□□ 0.48
CLRN1P58418 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC18.04■□□□□ 0.48
CLRN1P58418 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC18.04■□□□□ 0.48
CLRN1P58418 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC18.04■□□□□ 0.48
CLRN1P58418 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CLRN1P58418 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC18.04■□□□□ 0.48
CLRN1P58418 MAZ-216ENST00000616501 991 ntTSL 5 BASIC18.04■□□□□ 0.48
CLRN1P58418 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC18.04■□□□□ 0.48
CLRN1P58418 PARP1-210ENST00000629232 477 ntTSL 5 BASIC18.04■□□□□ 0.48
CLRN1P58418 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLRN1P58418 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
CLRN1P58418 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CLRN1P58418 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLRN1P58418 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC18.04■□□□□ 0.48
CLRN1P58418 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLRN1P58418 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CLRN1P58418 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC18.03■□□□□ 0.48
CLRN1P58418 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
CLRN1P58418 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC18.03■□□□□ 0.48
CLRN1P58418 AL512408.1-201ENST00000569378 2000 ntBASIC18.03■□□□□ 0.48
CLRN1P58418 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLRN1P58418 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLRN1P58418 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLRN1P58418 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLRN1P58418 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLRN1P58418 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
CLRN1P58418 MCRIP2P1-201ENST00000394346 511 ntBASIC18.03■□□□□ 0.48
CLRN1P58418 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
CLRN1P58418 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLRN1P58418 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
CLRN1P58418 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLRN1P58418 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLRN1P58418 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLRN1P58418 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CLRN1P58418 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLRN1P58418 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLRN1P58418 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC18.03■□□□□ 0.48
CLRN1P58418 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CLRN1P58418 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC18.03■□□□□ 0.48
CLRN1P58418 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLRN1P58418 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLRN1P58418 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC18.02■□□□□ 0.48
CLRN1P58418 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CLRN1P58418 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CLRN1P58418 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
CLRN1P58418 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CLRN1P58418 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CLRN1P58418 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CLRN1P58418 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CLRN1P58418 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
CLRN1P58418 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC18.02■□□□□ 0.48
CLRN1P58418 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
CLRN1P58418 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
CLRN1P58418 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC18.02■□□□□ 0.48
CLRN1P58418 AC080038.1-201ENST00000611274 1154 ntBASIC18.02■□□□□ 0.48
CLRN1P58418 AC100791.3-201ENST00000617619 330 ntBASIC18.02■□□□□ 0.48
CLRN1P58418 AC092437.1-201ENST00000624794 1048 ntBASIC18.02■□□□□ 0.48
CLRN1P58418 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC18.02■□□□□ 0.48
CLRN1P58418 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC18.02■□□□□ 0.47
CLRN1P58418 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
CLRN1P58418 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CLRN1P58418 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC18.02■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms