Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC19.05■□□□□ 0.64
LDB3O75112 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
LDB3O75112 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LDB3O75112 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
LDB3O75112 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
LDB3O75112 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
LDB3O75112 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC19.04■□□□□ 0.64
LDB3O75112 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
LDB3O75112 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC19.04■□□□□ 0.64
LDB3O75112 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
LDB3O75112 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC19.04■□□□□ 0.64
LDB3O75112 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LDB3O75112 AC142086.2-201ENST00000569753 217 ntBASIC19.04■□□□□ 0.64
LDB3O75112 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC19.04■□□□□ 0.64
LDB3O75112 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC19.04■□□□□ 0.64
LDB3O75112 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC19.04■□□□□ 0.64
LDB3O75112 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC19.04■□□□□ 0.64
LDB3O75112 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LDB3O75112 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LDB3O75112 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
LDB3O75112 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LDB3O75112 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LDB3O75112 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
LDB3O75112 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC19.03■□□□□ 0.64
LDB3O75112 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC19.03■□□□□ 0.64
LDB3O75112 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC19.03■□□□□ 0.64
LDB3O75112 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC19.03■□□□□ 0.64
LDB3O75112 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC19.03■□□□□ 0.64
LDB3O75112 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC19.03■□□□□ 0.64
LDB3O75112 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
LDB3O75112 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC19.03■□□□□ 0.64
LDB3O75112 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LDB3O75112 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LDB3O75112 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
LDB3O75112 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
LDB3O75112 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC19.02■□□□□ 0.64
LDB3O75112 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
LDB3O75112 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC19.02■□□□□ 0.64
LDB3O75112 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
LDB3O75112 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC19.02■□□□□ 0.64
LDB3O75112 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
LDB3O75112 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC19.02■□□□□ 0.64
LDB3O75112 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC19.02■□□□□ 0.64
LDB3O75112 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
LDB3O75112 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC19.02■□□□□ 0.64
LDB3O75112 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC19.02■□□□□ 0.64
LDB3O75112 AC069152.1-201ENST00000438030 544 ntBASIC19.02■□□□□ 0.64
LDB3O75112 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC19.02■□□□□ 0.64
LDB3O75112 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC19.02■□□□□ 0.64
LDB3O75112 HES2-205ENST00000487437 968 ntTSL 3 BASIC19.02■□□□□ 0.64
LDB3O75112 AC091874.3-201ENST00000512672 1195 ntBASIC19.02■□□□□ 0.64
LDB3O75112 BET1L-207ENST00000529614 560 ntTSL 5 BASIC19.02■□□□□ 0.64
LDB3O75112 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC19.02■□□□□ 0.64
LDB3O75112 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC19.02■□□□□ 0.64
LDB3O75112 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.64
LDB3O75112 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
LDB3O75112 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
LDB3O75112 DET1-207ENST00000564406 2315 ntTSL 2 BASIC19.02■□□□□ 0.64
LDB3O75112 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.63
LDB3O75112 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
LDB3O75112 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC19.02■□□□□ 0.63
LDB3O75112 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
LDB3O75112 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
LDB3O75112 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
LDB3O75112 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
LDB3O75112 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC19.01■□□□□ 0.63
LDB3O75112 NXN-202ENST00000537628 1340 ntTSL 3 BASIC19.01■□□□□ 0.63
LDB3O75112 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC19.01■□□□□ 0.63
LDB3O75112 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
LDB3O75112 SMG8-203ENST00000578922 2178 ntBASIC19.01■□□□□ 0.63
LDB3O75112 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
LDB3O75112 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
LDB3O75112 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC19.01■□□□□ 0.63
LDB3O75112 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
LDB3O75112 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
LDB3O75112 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC19.01■□□□□ 0.63
LDB3O75112 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC19.01■□□□□ 0.63
LDB3O75112 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
LDB3O75112 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
LDB3O75112 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
LDB3O75112 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
LDB3O75112 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC19.01■□□□□ 0.63
LDB3O75112 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC19.01■□□□□ 0.63
LDB3O75112 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
LDB3O75112 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
LDB3O75112 DPP3P2-201ENST00000416030 1696 ntBASIC19.01■□□□□ 0.63
LDB3O75112 GABARAPL3-202ENST00000624044 1851 ntBASIC19.01■□□□□ 0.63
LDB3O75112 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC19.01■□□□□ 0.63
LDB3O75112 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
LDB3O75112 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC19■□□□□ 0.63
LDB3O75112 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LDB3O75112 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC19■□□□□ 0.63
LDB3O75112 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC19■□□□□ 0.63
LDB3O75112 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
LDB3O75112 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
LDB3O75112 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LDB3O75112 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LDB3O75112 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
LDB3O75112 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC19■□□□□ 0.63
LDB3O75112 EMC9-206ENST00000560403 872 ntTSL 2 BASIC19■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms