Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CHFRQ96EP1 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CHFRQ96EP1 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
CHFRQ96EP1 FAM210CP-201ENST00000445714 574 ntBASIC20.72■□□□□ 0.91
CHFRQ96EP1 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CHFRQ96EP1 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC20.72■□□□□ 0.91
CHFRQ96EP1 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CHFRQ96EP1 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC20.72■□□□□ 0.91
CHFRQ96EP1 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC20.72■□□□□ 0.91
CHFRQ96EP1 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
CHFRQ96EP1 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CHFRQ96EP1 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CHFRQ96EP1 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
CHFRQ96EP1 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CHFRQ96EP1 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CHFRQ96EP1 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CHFRQ96EP1 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CHFRQ96EP1 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CHFRQ96EP1 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CHFRQ96EP1 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
CHFRQ96EP1 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
CHFRQ96EP1 MYB-221ENST00000527615 2381 ntTSL 5 BASIC20.71■□□□□ 0.91
CHFRQ96EP1 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CHFRQ96EP1 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
CHFRQ96EP1 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
CHFRQ96EP1 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC20.71■□□□□ 0.91
CHFRQ96EP1 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC20.71■□□□□ 0.91
CHFRQ96EP1 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC20.71■□□□□ 0.91
CHFRQ96EP1 RARRES2P10-201ENST00000564312 460 ntBASIC20.71■□□□□ 0.91
CHFRQ96EP1 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC20.71■□□□□ 0.91
CHFRQ96EP1 Six3os1_6.1-201ENST00000620790 196 ntBASIC20.71■□□□□ 0.91
CHFRQ96EP1 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
CHFRQ96EP1 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CHFRQ96EP1 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
CHFRQ96EP1 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC20.71■□□□□ 0.91
CHFRQ96EP1 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CHFRQ96EP1 AC124283.5-201ENST00000624661 1809 ntBASIC20.71■□□□□ 0.91
CHFRQ96EP1 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CHFRQ96EP1 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC20.7■□□□□ 0.91
CHFRQ96EP1 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC20.7■□□□□ 0.91
CHFRQ96EP1 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CHFRQ96EP1 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CHFRQ96EP1 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CHFRQ96EP1 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CHFRQ96EP1 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
CHFRQ96EP1 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
CHFRQ96EP1 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC20.7■□□□□ 0.9
CHFRQ96EP1 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CHFRQ96EP1 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC20.7■□□□□ 0.9
CHFRQ96EP1 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC20.7■□□□□ 0.9
CHFRQ96EP1 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC20.7■□□□□ 0.9
CHFRQ96EP1 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC20.7■□□□□ 0.9
CHFRQ96EP1 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC20.7■□□□□ 0.9
CHFRQ96EP1 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CHFRQ96EP1 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC20.7■□□□□ 0.9
CHFRQ96EP1 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
CHFRQ96EP1 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CHFRQ96EP1 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CHFRQ96EP1 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CHFRQ96EP1 AC027702.1-201ENST00000563810 1770 ntBASIC20.69■□□□□ 0.9
CHFRQ96EP1 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
CHFRQ96EP1 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CHFRQ96EP1 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CHFRQ96EP1 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
CHFRQ96EP1 AC244015.2-201ENST00000616358 1861 ntBASIC20.69■□□□□ 0.9
CHFRQ96EP1 PARN-205ENST00000539279 1557 ntTSL 2 BASIC20.69■□□□□ 0.9
CHFRQ96EP1 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC20.69■□□□□ 0.9
CHFRQ96EP1 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC20.69■□□□□ 0.9
CHFRQ96EP1 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC20.69■□□□□ 0.9
CHFRQ96EP1 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC20.69■□□□□ 0.9
CHFRQ96EP1 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC20.69■□□□□ 0.9
CHFRQ96EP1 DHDH-203ENST00000522614 776 ntTSL 5 BASIC20.69■□□□□ 0.9
CHFRQ96EP1 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC20.69■□□□□ 0.9
CHFRQ96EP1 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC20.69■□□□□ 0.9
CHFRQ96EP1 AL355075.4-201ENST00000554988 638 ntBASIC20.69■□□□□ 0.9
CHFRQ96EP1 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
CHFRQ96EP1 LINC01023-201ENST00000606054 436 ntBASIC20.69■□□□□ 0.9
CHFRQ96EP1 KRT17P2-201ENST00000300992 1314 ntBASIC20.69■□□□□ 0.9
CHFRQ96EP1 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
CHFRQ96EP1 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CHFRQ96EP1 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC20.68■□□□□ 0.9
CHFRQ96EP1 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC20.68■□□□□ 0.9
CHFRQ96EP1 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC20.68■□□□□ 0.9
CHFRQ96EP1 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CHFRQ96EP1 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CHFRQ96EP1 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CHFRQ96EP1 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC20.68■□□□□ 0.9
CHFRQ96EP1 PENK-204ENST00000518770 863 ntTSL 2 BASIC20.68■□□□□ 0.9
CHFRQ96EP1 PRKY-204ENST00000533551 1019 ntBASIC20.68■□□□□ 0.9
CHFRQ96EP1 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC20.68■□□□□ 0.9
CHFRQ96EP1 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
CHFRQ96EP1 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC20.68■□□□□ 0.9
CHFRQ96EP1 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC20.68■□□□□ 0.9
CHFRQ96EP1 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
CHFRQ96EP1 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
CHFRQ96EP1 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CHFRQ96EP1 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CHFRQ96EP1 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC20.67■□□□□ 0.9
CHFRQ96EP1 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CHFRQ96EP1 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms