Protein–RNA interactions for Protein: Q7Z3V4

UBE3B, Ubiquitin-protein ligase E3B, humanhuman

Predictions only

Length 1,068 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3BQ7Z3V4 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC25.36■■□□□ 1.65
UBE3BQ7Z3V4 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC25.36■■□□□ 1.65
UBE3BQ7Z3V4 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
UBE3BQ7Z3V4 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC25.36■■□□□ 1.65
UBE3BQ7Z3V4 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
UBE3BQ7Z3V4 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC25.36■■□□□ 1.65
UBE3BQ7Z3V4 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
UBE3BQ7Z3V4 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC25.36■■□□□ 1.65
UBE3BQ7Z3V4 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
UBE3BQ7Z3V4 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
UBE3BQ7Z3V4 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC25.36■■□□□ 1.65
UBE3BQ7Z3V4 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC25.36■■□□□ 1.65
UBE3BQ7Z3V4 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC25.35■■□□□ 1.65
UBE3BQ7Z3V4 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC25.35■■□□□ 1.65
UBE3BQ7Z3V4 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC25.35■■□□□ 1.65
UBE3BQ7Z3V4 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
UBE3BQ7Z3V4 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
UBE3BQ7Z3V4 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
UBE3BQ7Z3V4 C1QBPP2-201ENST00000528754 825 ntBASIC25.35■■□□□ 1.65
UBE3BQ7Z3V4 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC25.35■■□□□ 1.65
UBE3BQ7Z3V4 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
UBE3BQ7Z3V4 AC120498.8-201ENST00000614275 531 ntBASIC25.35■■□□□ 1.65
UBE3BQ7Z3V4 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC25.35■■□□□ 1.65
UBE3BQ7Z3V4 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC25.35■■□□□ 1.65
UBE3BQ7Z3V4 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC25.34■■□□□ 1.65
UBE3BQ7Z3V4 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
UBE3BQ7Z3V4 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
UBE3BQ7Z3V4 AL390719.1-204ENST00000412397 1219 ntBASIC25.34■■□□□ 1.65
UBE3BQ7Z3V4 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC25.34■■□□□ 1.65
UBE3BQ7Z3V4 RPPH1-201ENST00000516869 333 ntBASIC25.34■■□□□ 1.65
UBE3BQ7Z3V4 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC25.34■■□□□ 1.65
UBE3BQ7Z3V4 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC25.34■■□□□ 1.65
UBE3BQ7Z3V4 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
UBE3BQ7Z3V4 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
UBE3BQ7Z3V4 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
UBE3BQ7Z3V4 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC25.34■■□□□ 1.65
UBE3BQ7Z3V4 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC25.34■■□□□ 1.65
UBE3BQ7Z3V4 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
UBE3BQ7Z3V4 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC25.34■■□□□ 1.65
UBE3BQ7Z3V4 FP700111.2-201ENST00000619190 1892 ntBASIC25.34■■□□□ 1.65
UBE3BQ7Z3V4 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
UBE3BQ7Z3V4 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC25.34■■□□□ 1.65
UBE3BQ7Z3V4 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC25.34■■□□□ 1.65
UBE3BQ7Z3V4 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC25.33■■□□□ 1.65
UBE3BQ7Z3V4 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
UBE3BQ7Z3V4 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
UBE3BQ7Z3V4 RER1-204ENST00000378518 522 ntTSL 3 BASIC25.33■■□□□ 1.65
UBE3BQ7Z3V4 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
UBE3BQ7Z3V4 THEM4-205ENST00000489410 643 ntTSL 2 BASIC25.33■■□□□ 1.65
UBE3BQ7Z3V4 RNF121-214ENST00000533380 870 ntTSL 3 BASIC25.33■■□□□ 1.65
UBE3BQ7Z3V4 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC25.33■■□□□ 1.65
UBE3BQ7Z3V4 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
UBE3BQ7Z3V4 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC25.33■■□□□ 1.65
UBE3BQ7Z3V4 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC25.33■■□□□ 1.64
UBE3BQ7Z3V4 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC25.33■■□□□ 1.64
UBE3BQ7Z3V4 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC25.33■■□□□ 1.64
UBE3BQ7Z3V4 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC25.32■■□□□ 1.64
UBE3BQ7Z3V4 AC006128.1-201ENST00000624704 1661 ntBASIC25.32■■□□□ 1.64
UBE3BQ7Z3V4 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC25.32■■□□□ 1.64
UBE3BQ7Z3V4 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC25.32■■□□□ 1.64
UBE3BQ7Z3V4 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC25.32■■□□□ 1.64
UBE3BQ7Z3V4 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC25.32■■□□□ 1.64
UBE3BQ7Z3V4 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
UBE3BQ7Z3V4 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC25.32■■□□□ 1.64
UBE3BQ7Z3V4 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC25.32■■□□□ 1.64
UBE3BQ7Z3V4 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC25.32■■□□□ 1.64
UBE3BQ7Z3V4 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC25.32■■□□□ 1.64
UBE3BQ7Z3V4 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC25.32■■□□□ 1.64
UBE3BQ7Z3V4 RHOD-202ENST00000532559 538 ntTSL 3 BASIC25.32■■□□□ 1.64
UBE3BQ7Z3V4 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC25.32■■□□□ 1.64
UBE3BQ7Z3V4 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC25.32■■□□□ 1.64
UBE3BQ7Z3V4 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC25.32■■□□□ 1.64
UBE3BQ7Z3V4 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC25.32■■□□□ 1.64
UBE3BQ7Z3V4 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC25.32■■□□□ 1.64
UBE3BQ7Z3V4 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
UBE3BQ7Z3V4 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
UBE3BQ7Z3V4 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC25.32■■□□□ 1.64
UBE3BQ7Z3V4 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
UBE3BQ7Z3V4 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC25.31■■□□□ 1.64
UBE3BQ7Z3V4 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC25.31■■□□□ 1.64
UBE3BQ7Z3V4 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC25.31■■□□□ 1.64
UBE3BQ7Z3V4 ABHD17AP6-201ENST00000458502 1044 ntBASIC25.31■■□□□ 1.64
UBE3BQ7Z3V4 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC25.31■■□□□ 1.64
UBE3BQ7Z3V4 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC25.31■■□□□ 1.64
UBE3BQ7Z3V4 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC25.31■■□□□ 1.64
UBE3BQ7Z3V4 AC007375.3-201ENST00000600936 2314 ntBASIC25.31■■□□□ 1.64
UBE3BQ7Z3V4 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC25.31■■□□□ 1.64
UBE3BQ7Z3V4 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
UBE3BQ7Z3V4 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
UBE3BQ7Z3V4 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC25.3■■□□□ 1.64
UBE3BQ7Z3V4 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
UBE3BQ7Z3V4 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC25.3■■□□□ 1.64
UBE3BQ7Z3V4 BAALC-201ENST00000297574 801 ntTSL 3 BASIC25.3■■□□□ 1.64
UBE3BQ7Z3V4 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC25.3■■□□□ 1.64
UBE3BQ7Z3V4 HES2-206ENST00000489730 730 ntTSL 2 BASIC25.3■■□□□ 1.64
UBE3BQ7Z3V4 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
UBE3BQ7Z3V4 MTDHP1-201ENST00000605323 784 ntBASIC25.3■■□□□ 1.64
UBE3BQ7Z3V4 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC25.3■■□□□ 1.64
UBE3BQ7Z3V4 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC25.3■■□□□ 1.64
UBE3BQ7Z3V4 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC25.3■■□□□ 1.64
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms