Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
FOXA1P55317 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC19.63■□□□□ 0.73
FOXA1P55317 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
FOXA1P55317 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC19.63■□□□□ 0.73
FOXA1P55317 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
FOXA1P55317 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
FOXA1P55317 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
FOXA1P55317 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
FOXA1P55317 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
FOXA1P55317 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC19.62■□□□□ 0.73
FOXA1P55317 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC19.62■□□□□ 0.73
FOXA1P55317 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
FOXA1P55317 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
FOXA1P55317 GUK1-205ENST00000366722 850 ntTSL 3 BASIC19.62■□□□□ 0.73
FOXA1P55317 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
FOXA1P55317 KRT19P1-201ENST00000405746 1186 ntBASIC19.62■□□□□ 0.73
FOXA1P55317 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
FOXA1P55317 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC19.62■□□□□ 0.73
FOXA1P55317 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC19.62■□□□□ 0.73
FOXA1P55317 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
FOXA1P55317 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
FOXA1P55317 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC19.62■□□□□ 0.73
FOXA1P55317 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
FOXA1P55317 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
FOXA1P55317 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
FOXA1P55317 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
FOXA1P55317 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
FOXA1P55317 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC19.62■□□□□ 0.73
FOXA1P55317 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
FOXA1P55317 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
FOXA1P55317 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
FOXA1P55317 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
FOXA1P55317 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
FOXA1P55317 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
FOXA1P55317 AL691432.2-201ENST00000607222 2038 ntBASIC19.61■□□□□ 0.73
FOXA1P55317 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
FOXA1P55317 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
FOXA1P55317 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
FOXA1P55317 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
FOXA1P55317 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
FOXA1P55317 SAPCD2P1-201ENST00000395413 1184 ntBASIC19.61■□□□□ 0.73
FOXA1P55317 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
FOXA1P55317 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
FOXA1P55317 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
FOXA1P55317 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
FOXA1P55317 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC19.61■□□□□ 0.73
FOXA1P55317 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC19.61■□□□□ 0.73
FOXA1P55317 AL158211.5-201ENST00000623583 2518 ntBASIC19.61■□□□□ 0.73
FOXA1P55317 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
FOXA1P55317 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
FOXA1P55317 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
FOXA1P55317 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
FOXA1P55317 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
FOXA1P55317 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
FOXA1P55317 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
FOXA1P55317 HACD1-201ENST00000326961 773 ntTSL 2 BASIC19.6■□□□□ 0.73
FOXA1P55317 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC19.6■□□□□ 0.73
FOXA1P55317 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC19.6■□□□□ 0.73
FOXA1P55317 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
FOXA1P55317 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC19.6■□□□□ 0.73
FOXA1P55317 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC19.6■□□□□ 0.73
FOXA1P55317 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
FOXA1P55317 MYCNOS-205ENST00000641950 531 ntBASIC19.6■□□□□ 0.73
FOXA1P55317 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
FOXA1P55317 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
FOXA1P55317 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC19.6■□□□□ 0.73
FOXA1P55317 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC19.6■□□□□ 0.73
FOXA1P55317 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
FOXA1P55317 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
FOXA1P55317 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
FOXA1P55317 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
FOXA1P55317 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
FOXA1P55317 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
FOXA1P55317 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
FOXA1P55317 UQCRFS1P1-201ENST00000435169 820 ntBASIC19.59■□□□□ 0.73
FOXA1P55317 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
FOXA1P55317 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC19.59■□□□□ 0.73
FOXA1P55317 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
FOXA1P55317 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
FOXA1P55317 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
FOXA1P55317 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
FOXA1P55317 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC19.59■□□□□ 0.73
FOXA1P55317 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC19.58■□□□□ 0.73
FOXA1P55317 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
FOXA1P55317 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
FOXA1P55317 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
FOXA1P55317 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC19.58■□□□□ 0.73
FOXA1P55317 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
FOXA1P55317 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC19.58■□□□□ 0.73
FOXA1P55317 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.73
FOXA1P55317 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
FOXA1P55317 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC19.58■□□□□ 0.73
FOXA1P55317 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
FOXA1P55317 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
FOXA1P55317 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
FOXA1P55317 PARP1-202ENST00000366792 553 ntTSL 3 BASIC19.58■□□□□ 0.72
FOXA1P55317 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC19.58■□□□□ 0.72
FOXA1P55317 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC19.58■□□□□ 0.72
FOXA1P55317 VMO1-204ENST00000441199 741 ntTSL 2 BASIC19.58■□□□□ 0.72
FOXA1P55317 FAM21FP-204ENST00000608637 956 ntBASIC19.58■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms