Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC18.54■□□□□ 0.56
MSX1P28360 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC18.54■□□□□ 0.56
MSX1P28360 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC18.54■□□□□ 0.56
MSX1P28360 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
MSX1P28360 AC105020.6-201ENST00000621523 1217 ntBASIC18.54■□□□□ 0.56
MSX1P28360 MYC-209ENST00000641252 345 ntBASIC18.54■□□□□ 0.56
MSX1P28360 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
MSX1P28360 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
MSX1P28360 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC18.54■□□□□ 0.56
MSX1P28360 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
MSX1P28360 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC18.54■□□□□ 0.56
MSX1P28360 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
MSX1P28360 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC18.54■□□□□ 0.56
MSX1P28360 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
MSX1P28360 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC18.54■□□□□ 0.56
MSX1P28360 EFS-203ENST00000429593 2610 ntTSL 2 BASIC18.53■□□□□ 0.56
MSX1P28360 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
MSX1P28360 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
MSX1P28360 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC18.53■□□□□ 0.56
MSX1P28360 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
MSX1P28360 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
MSX1P28360 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
MSX1P28360 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC18.53■□□□□ 0.56
MSX1P28360 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
MSX1P28360 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
MSX1P28360 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
MSX1P28360 BID-203ENST00000399765 1879 ntTSL 2 BASIC18.53■□□□□ 0.56
MSX1P28360 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC18.53■□□□□ 0.56
MSX1P28360 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC18.53■□□□□ 0.56
MSX1P28360 AL355472.2-201ENST00000422958 438 ntBASIC18.53■□□□□ 0.56
MSX1P28360 RHEB-204ENST00000472642 900 ntTSL 3 BASIC18.53■□□□□ 0.56
MSX1P28360 AC097658.1-201ENST00000475555 843 ntBASIC18.53■□□□□ 0.56
MSX1P28360 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC18.53■□□□□ 0.56
MSX1P28360 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
MSX1P28360 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC18.53■□□□□ 0.56
MSX1P28360 IRX5-204ENST00000560154 879 ntTSL 5 BASIC18.53■□□□□ 0.56
MSX1P28360 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC18.53■□□□□ 0.56
MSX1P28360 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
MSX1P28360 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
MSX1P28360 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC18.53■□□□□ 0.56
MSX1P28360 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC18.53■□□□□ 0.56
MSX1P28360 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC18.53■□□□□ 0.56
MSX1P28360 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
MSX1P28360 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
MSX1P28360 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
MSX1P28360 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
MSX1P28360 ME2-216ENST00000639850 2331 ntTSL 5 BASIC18.52■□□□□ 0.56
MSX1P28360 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
MSX1P28360 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
MSX1P28360 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
MSX1P28360 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
MSX1P28360 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
MSX1P28360 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC18.52■□□□□ 0.56
MSX1P28360 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC18.52■□□□□ 0.56
MSX1P28360 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
MSX1P28360 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
MSX1P28360 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
MSX1P28360 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
MSX1P28360 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.55
MSX1P28360 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC18.52■□□□□ 0.55
MSX1P28360 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
MSX1P28360 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
MSX1P28360 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
MSX1P28360 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
MSX1P28360 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
MSX1P28360 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
MSX1P28360 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
MSX1P28360 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
MSX1P28360 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
MSX1P28360 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
MSX1P28360 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
MSX1P28360 AC098590.1-201ENST00000468126 897 ntBASIC18.51■□□□□ 0.55
MSX1P28360 RPS2P52-201ENST00000469610 820 ntBASIC18.51■□□□□ 0.55
MSX1P28360 ADM-205ENST00000528544 586 ntTSL 2 BASIC18.51■□□□□ 0.55
MSX1P28360 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC18.51■□□□□ 0.55
MSX1P28360 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC18.51■□□□□ 0.55
MSX1P28360 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
MSX1P28360 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC18.51■□□□□ 0.55
MSX1P28360 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
MSX1P28360 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
MSX1P28360 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
MSX1P28360 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
MSX1P28360 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
MSX1P28360 NXN-202ENST00000537628 1340 ntTSL 3 BASIC18.5■□□□□ 0.55
MSX1P28360 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
MSX1P28360 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
MSX1P28360 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC18.5■□□□□ 0.55
MSX1P28360 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC18.5■□□□□ 0.55
MSX1P28360 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC18.5■□□□□ 0.55
MSX1P28360 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC18.5■□□□□ 0.55
MSX1P28360 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
MSX1P28360 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC18.5■□□□□ 0.55
MSX1P28360 ESRRAP1-201ENST00000400596 1257 ntBASIC18.5■□□□□ 0.55
MSX1P28360 DUSP5P2-201ENST00000426873 1033 ntBASIC18.5■□□□□ 0.55
MSX1P28360 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC18.5■□□□□ 0.55
MSX1P28360 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC18.5■□□□□ 0.55
MSX1P28360 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
MSX1P28360 AP006294.2-201ENST00000641667 209 ntBASIC18.5■□□□□ 0.55
MSX1P28360 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC18.5■□□□□ 0.55
MSX1P28360 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms