Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
ZC3H4Q9UPT8 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
ZC3H4Q9UPT8 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC24.75■■□□□ 1.55
ZC3H4Q9UPT8 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
ZC3H4Q9UPT8 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
ZC3H4Q9UPT8 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
ZC3H4Q9UPT8 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC24.75■■□□□ 1.55
ZC3H4Q9UPT8 TREX2-204ENST00000370212 861 ntTSL 5 BASIC24.75■■□□□ 1.55
ZC3H4Q9UPT8 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC24.75■■□□□ 1.55
ZC3H4Q9UPT8 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
ZC3H4Q9UPT8 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC24.75■■□□□ 1.55
ZC3H4Q9UPT8 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC24.75■■□□□ 1.55
ZC3H4Q9UPT8 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC24.75■■□□□ 1.55
ZC3H4Q9UPT8 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
ZC3H4Q9UPT8 AP002982.1-201ENST00000492365 877 ntBASIC24.75■■□□□ 1.55
ZC3H4Q9UPT8 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC24.75■■□□□ 1.55
ZC3H4Q9UPT8 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC24.75■■□□□ 1.55
ZC3H4Q9UPT8 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC24.75■■□□□ 1.55
ZC3H4Q9UPT8 CLN6-221ENST00000637494 765 ntTSL 5 BASIC24.75■■□□□ 1.55
ZC3H4Q9UPT8 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
ZC3H4Q9UPT8 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
ZC3H4Q9UPT8 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
ZC3H4Q9UPT8 LGALS8-AS1-201ENST00000487567 1457 ntBASIC24.75■■□□□ 1.55
ZC3H4Q9UPT8 NARF-205ENST00000412079 1760 ntTSL 5 BASIC24.75■■□□□ 1.55
ZC3H4Q9UPT8 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
ZC3H4Q9UPT8 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC24.74■■□□□ 1.55
ZC3H4Q9UPT8 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC24.74■■□□□ 1.55
ZC3H4Q9UPT8 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
ZC3H4Q9UPT8 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
ZC3H4Q9UPT8 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC24.74■■□□□ 1.55
ZC3H4Q9UPT8 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
ZC3H4Q9UPT8 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
ZC3H4Q9UPT8 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
ZC3H4Q9UPT8 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC24.74■■□□□ 1.55
ZC3H4Q9UPT8 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC24.74■■□□□ 1.55
ZC3H4Q9UPT8 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC24.74■■□□□ 1.55
ZC3H4Q9UPT8 AL390955.1-201ENST00000428694 934 ntBASIC24.74■■□□□ 1.55
ZC3H4Q9UPT8 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC24.74■■□□□ 1.55
ZC3H4Q9UPT8 LINC01238-205ENST00000567549 1107 ntBASIC24.74■■□□□ 1.55
ZC3H4Q9UPT8 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC24.74■■□□□ 1.55
ZC3H4Q9UPT8 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC24.74■■□□□ 1.55
ZC3H4Q9UPT8 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
ZC3H4Q9UPT8 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
ZC3H4Q9UPT8 NFE2L3P1-201ENST00000588207 1959 ntBASIC24.74■■□□□ 1.55
ZC3H4Q9UPT8 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC24.74■■□□□ 1.55
ZC3H4Q9UPT8 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
ZC3H4Q9UPT8 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
ZC3H4Q9UPT8 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
ZC3H4Q9UPT8 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC24.73■■□□□ 1.55
ZC3H4Q9UPT8 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
ZC3H4Q9UPT8 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC24.73■■□□□ 1.55
ZC3H4Q9UPT8 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC24.73■■□□□ 1.55
ZC3H4Q9UPT8 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC24.73■■□□□ 1.55
ZC3H4Q9UPT8 HES2-206ENST00000489730 730 ntTSL 2 BASIC24.73■■□□□ 1.55
ZC3H4Q9UPT8 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC24.73■■□□□ 1.55
ZC3H4Q9UPT8 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC24.73■■□□□ 1.55
ZC3H4Q9UPT8 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC24.73■■□□□ 1.55
ZC3H4Q9UPT8 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC24.73■■□□□ 1.55
ZC3H4Q9UPT8 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC24.73■■□□□ 1.55
ZC3H4Q9UPT8 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC24.73■■□□□ 1.55
ZC3H4Q9UPT8 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC24.73■■□□□ 1.55
ZC3H4Q9UPT8 STX5-203ENST00000394690 1568 ntTSL 5 BASIC24.72■■□□□ 1.55
ZC3H4Q9UPT8 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
ZC3H4Q9UPT8 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC24.72■■□□□ 1.55
ZC3H4Q9UPT8 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
ZC3H4Q9UPT8 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC24.72■■□□□ 1.55
ZC3H4Q9UPT8 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
ZC3H4Q9UPT8 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC24.72■■□□□ 1.55
ZC3H4Q9UPT8 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC24.72■■□□□ 1.55
ZC3H4Q9UPT8 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC24.72■■□□□ 1.55
ZC3H4Q9UPT8 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC24.72■■□□□ 1.55
ZC3H4Q9UPT8 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
ZC3H4Q9UPT8 NMU-205ENST00000511469 756 ntTSL 3 BASIC24.72■■□□□ 1.55
ZC3H4Q9UPT8 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC24.72■■□□□ 1.55
ZC3H4Q9UPT8 AL121894.2-201ENST00000602977 491 ntBASIC24.72■■□□□ 1.55
ZC3H4Q9UPT8 AC004264.1-201ENST00000608354 794 ntBASIC24.72■■□□□ 1.55
ZC3H4Q9UPT8 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC24.72■■□□□ 1.55
ZC3H4Q9UPT8 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
ZC3H4Q9UPT8 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC24.71■■□□□ 1.55
ZC3H4Q9UPT8 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
ZC3H4Q9UPT8 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
ZC3H4Q9UPT8 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
ZC3H4Q9UPT8 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC24.71■■□□□ 1.55
ZC3H4Q9UPT8 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC24.71■■□□□ 1.55
ZC3H4Q9UPT8 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC24.71■■□□□ 1.55
ZC3H4Q9UPT8 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
ZC3H4Q9UPT8 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC24.71■■□□□ 1.55
ZC3H4Q9UPT8 AC010203.1-204ENST00000548782 407 ntBASIC24.71■■□□□ 1.55
ZC3H4Q9UPT8 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC24.71■■□□□ 1.55
ZC3H4Q9UPT8 AL356652.1-201ENST00000615962 565 ntBASIC24.71■■□□□ 1.55
ZC3H4Q9UPT8 AL358472.4-201ENST00000633140 710 ntBASIC24.71■■□□□ 1.55
ZC3H4Q9UPT8 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
ZC3H4Q9UPT8 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC24.71■■□□□ 1.55
ZC3H4Q9UPT8 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.55
ZC3H4Q9UPT8 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC24.7■■□□□ 1.55
ZC3H4Q9UPT8 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC24.7■■□□□ 1.55
ZC3H4Q9UPT8 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC24.7■■□□□ 1.55
ZC3H4Q9UPT8 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.55
ZC3H4Q9UPT8 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
ZC3H4Q9UPT8 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms