Protein–RNA interactions for Protein: Q9ULB4

CDH9, Cadherin-9, humanhuman

Predictions only

Length 789 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH9Q9ULB4 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CDH9Q9ULB4 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CDH9Q9ULB4 SLC29A4P2-201ENST00000504749 1089 ntBASIC21.51■■□□□ 1.03
CDH9Q9ULB4 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
CDH9Q9ULB4 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC21.51■■□□□ 1.03
CDH9Q9ULB4 TMEM191A-211ENST00000637163 1067 ntBASIC21.51■■□□□ 1.03
CDH9Q9ULB4 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CDH9Q9ULB4 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
CDH9Q9ULB4 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
CDH9Q9ULB4 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CDH9Q9ULB4 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC21.51■■□□□ 1.03
CDH9Q9ULB4 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC21.51■■□□□ 1.03
CDH9Q9ULB4 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CDH9Q9ULB4 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CDH9Q9ULB4 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CDH9Q9ULB4 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC21.5■■□□□ 1.03
CDH9Q9ULB4 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC21.5■■□□□ 1.03
CDH9Q9ULB4 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
CDH9Q9ULB4 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CDH9Q9ULB4 CLDN5-201ENST00000403084 2357 ntBASIC21.5■■□□□ 1.03
CDH9Q9ULB4 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CDH9Q9ULB4 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC21.5■■□□□ 1.03
CDH9Q9ULB4 OR2A1-AS1-207ENST00000486094 819 ntBASIC21.5■■□□□ 1.03
CDH9Q9ULB4 UNC93B4-201ENST00000505679 747 ntBASIC21.5■■□□□ 1.03
CDH9Q9ULB4 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CDH9Q9ULB4 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC21.5■■□□□ 1.03
CDH9Q9ULB4 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CDH9Q9ULB4 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CDH9Q9ULB4 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC21.5■■□□□ 1.03
CDH9Q9ULB4 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC21.5■■□□□ 1.03
CDH9Q9ULB4 AC007225.1-201ENST00000566331 1836 ntBASIC21.5■■□□□ 1.03
CDH9Q9ULB4 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC21.5■■□□□ 1.03
CDH9Q9ULB4 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CDH9Q9ULB4 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
CDH9Q9ULB4 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CDH9Q9ULB4 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
CDH9Q9ULB4 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
CDH9Q9ULB4 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CDH9Q9ULB4 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
CDH9Q9ULB4 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC21.49■■□□□ 1.03
CDH9Q9ULB4 GGT1-206ENST00000404223 952 ntTSL 2 BASIC21.49■■□□□ 1.03
CDH9Q9ULB4 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC21.49■■□□□ 1.03
CDH9Q9ULB4 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
CDH9Q9ULB4 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC21.49■■□□□ 1.03
CDH9Q9ULB4 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CDH9Q9ULB4 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CDH9Q9ULB4 ITM2C-210ENST00000620962 501 ntBASIC21.49■■□□□ 1.03
CDH9Q9ULB4 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CDH9Q9ULB4 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CDH9Q9ULB4 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
CDH9Q9ULB4 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CDH9Q9ULB4 MOK-233ENST00000524214 1539 ntTSL 2 BASIC21.49■■□□□ 1.03
CDH9Q9ULB4 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CDH9Q9ULB4 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CDH9Q9ULB4 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC21.49■■□□□ 1.03
CDH9Q9ULB4 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CDH9Q9ULB4 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
CDH9Q9ULB4 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC21.48■■□□□ 1.03
CDH9Q9ULB4 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CDH9Q9ULB4 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
CDH9Q9ULB4 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CDH9Q9ULB4 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CDH9Q9ULB4 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CDH9Q9ULB4 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC21.48■■□□□ 1.03
CDH9Q9ULB4 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC21.48■■□□□ 1.03
CDH9Q9ULB4 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC21.48■■□□□ 1.03
CDH9Q9ULB4 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC21.48■■□□□ 1.03
CDH9Q9ULB4 AC005829.2-201ENST00000571422 1056 ntBASIC21.48■■□□□ 1.03
CDH9Q9ULB4 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC21.48■■□□□ 1.03
CDH9Q9ULB4 AC008403.3-201ENST00000598924 454 ntBASIC21.48■■□□□ 1.03
CDH9Q9ULB4 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
CDH9Q9ULB4 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
CDH9Q9ULB4 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CDH9Q9ULB4 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC21.48■■□□□ 1.03
CDH9Q9ULB4 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
CDH9Q9ULB4 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CDH9Q9ULB4 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC21.48■■□□□ 1.03
CDH9Q9ULB4 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CDH9Q9ULB4 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC21.47■■□□□ 1.03
CDH9Q9ULB4 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CDH9Q9ULB4 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CDH9Q9ULB4 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CDH9Q9ULB4 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
CDH9Q9ULB4 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CDH9Q9ULB4 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CDH9Q9ULB4 PALM-208ENST00000592155 2272 ntTSL 4 BASIC21.47■■□□□ 1.03
CDH9Q9ULB4 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CDH9Q9ULB4 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CDH9Q9ULB4 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC21.47■■□□□ 1.03
CDH9Q9ULB4 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CDH9Q9ULB4 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
CDH9Q9ULB4 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CDH9Q9ULB4 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC21.47■■□□□ 1.03
CDH9Q9ULB4 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC21.47■■□□□ 1.03
CDH9Q9ULB4 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CDH9Q9ULB4 SOX15-203ENST00000570788 1093 ntBASIC21.47■■□□□ 1.03
CDH9Q9ULB4 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC21.47■■□□□ 1.03
CDH9Q9ULB4 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC21.47■■□□□ 1.03
CDH9Q9ULB4 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CDH9Q9ULB4 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms