Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VSX1Q9NZR4 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
VSX1Q9NZR4 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
VSX1Q9NZR4 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VSX1Q9NZR4 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VSX1Q9NZR4 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
VSX1Q9NZR4 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
VSX1Q9NZR4 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC18.12■□□□□ 0.49
VSX1Q9NZR4 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC18.12■□□□□ 0.49
VSX1Q9NZR4 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC18.12■□□□□ 0.49
VSX1Q9NZR4 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC18.12■□□□□ 0.49
VSX1Q9NZR4 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
VSX1Q9NZR4 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VSX1Q9NZR4 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
VSX1Q9NZR4 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VSX1Q9NZR4 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VSX1Q9NZR4 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VSX1Q9NZR4 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC18.12■□□□□ 0.49
VSX1Q9NZR4 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC18.12■□□□□ 0.49
VSX1Q9NZR4 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VSX1Q9NZR4 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
VSX1Q9NZR4 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VSX1Q9NZR4 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
VSX1Q9NZR4 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
VSX1Q9NZR4 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC18.11■□□□□ 0.49
VSX1Q9NZR4 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VSX1Q9NZR4 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC18.11■□□□□ 0.49
VSX1Q9NZR4 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
VSX1Q9NZR4 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC18.11■□□□□ 0.49
VSX1Q9NZR4 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VSX1Q9NZR4 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VSX1Q9NZR4 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VSX1Q9NZR4 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
VSX1Q9NZR4 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
VSX1Q9NZR4 TERF1P5-201ENST00000477545 1207 ntBASIC18.11■□□□□ 0.49
VSX1Q9NZR4 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC18.11■□□□□ 0.49
VSX1Q9NZR4 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
VSX1Q9NZR4 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
VSX1Q9NZR4 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC18.11■□□□□ 0.49
VSX1Q9NZR4 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC18.11■□□□□ 0.49
VSX1Q9NZR4 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC18.11■□□□□ 0.49
VSX1Q9NZR4 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
VSX1Q9NZR4 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VSX1Q9NZR4 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
VSX1Q9NZR4 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
VSX1Q9NZR4 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC18.11■□□□□ 0.49
VSX1Q9NZR4 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC18.11■□□□□ 0.49
VSX1Q9NZR4 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC18.11■□□□□ 0.49
VSX1Q9NZR4 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC18.11■□□□□ 0.49
VSX1Q9NZR4 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VSX1Q9NZR4 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC18.1■□□□□ 0.49
VSX1Q9NZR4 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VSX1Q9NZR4 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
VSX1Q9NZR4 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
VSX1Q9NZR4 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VSX1Q9NZR4 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VSX1Q9NZR4 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
VSX1Q9NZR4 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VSX1Q9NZR4 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VSX1Q9NZR4 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
VSX1Q9NZR4 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC18.1■□□□□ 0.49
VSX1Q9NZR4 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC18.1■□□□□ 0.49
VSX1Q9NZR4 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
VSX1Q9NZR4 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC18.1■□□□□ 0.49
VSX1Q9NZR4 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC18.1■□□□□ 0.49
VSX1Q9NZR4 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
VSX1Q9NZR4 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
VSX1Q9NZR4 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC18.1■□□□□ 0.49
VSX1Q9NZR4 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC18.1■□□□□ 0.49
VSX1Q9NZR4 AC087623.3-201ENST00000607047 1098 ntBASIC18.1■□□□□ 0.49
VSX1Q9NZR4 AC010536.3-201ENST00000620306 533 ntBASIC18.1■□□□□ 0.49
VSX1Q9NZR4 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
VSX1Q9NZR4 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VSX1Q9NZR4 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC18.1■□□□□ 0.49
VSX1Q9NZR4 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
VSX1Q9NZR4 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC18.09■□□□□ 0.49
VSX1Q9NZR4 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
VSX1Q9NZR4 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC18.09■□□□□ 0.49
VSX1Q9NZR4 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
VSX1Q9NZR4 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC18.09■□□□□ 0.49
VSX1Q9NZR4 KRT18P11-201ENST00000435214 1283 ntBASIC18.09■□□□□ 0.49
VSX1Q9NZR4 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
VSX1Q9NZR4 BRI3-207ENST00000539286 699 ntTSL 2 BASIC18.09■□□□□ 0.49
VSX1Q9NZR4 DBI-210ENST00000542275 757 ntTSL 5 BASIC18.09■□□□□ 0.49
VSX1Q9NZR4 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC18.09■□□□□ 0.49
VSX1Q9NZR4 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
VSX1Q9NZR4 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
VSX1Q9NZR4 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
VSX1Q9NZR4 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC18.09■□□□□ 0.49
VSX1Q9NZR4 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.49
VSX1Q9NZR4 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.49
VSX1Q9NZR4 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
VSX1Q9NZR4 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.49
VSX1Q9NZR4 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
VSX1Q9NZR4 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
VSX1Q9NZR4 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
VSX1Q9NZR4 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
VSX1Q9NZR4 STX7-201ENST00000367937 1090 ntTSL 5 BASIC18.08■□□□□ 0.48
VSX1Q9NZR4 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC18.08■□□□□ 0.48
VSX1Q9NZR4 UQCRFS1P1-201ENST00000435169 820 ntBASIC18.08■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms