Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC20.98■□□□□ 0.95
PCDH9Q9HC56 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC20.98■□□□□ 0.95
PCDH9Q9HC56 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
PCDH9Q9HC56 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
PCDH9Q9HC56 AC011767.1-201ENST00000617410 1153 ntBASIC20.98■□□□□ 0.95
PCDH9Q9HC56 AC010536.3-201ENST00000620306 533 ntBASIC20.98■□□□□ 0.95
PCDH9Q9HC56 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PCDH9Q9HC56 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PCDH9Q9HC56 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PCDH9Q9HC56 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PCDH9Q9HC56 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
PCDH9Q9HC56 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PCDH9Q9HC56 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
PCDH9Q9HC56 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC20.97■□□□□ 0.95
PCDH9Q9HC56 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC20.97■□□□□ 0.95
PCDH9Q9HC56 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
PCDH9Q9HC56 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
PCDH9Q9HC56 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC20.97■□□□□ 0.95
PCDH9Q9HC56 AL137784.2-201ENST00000607332 1000 ntBASIC20.97■□□□□ 0.95
PCDH9Q9HC56 AC243732.1-201ENST00000612648 864 ntBASIC20.97■□□□□ 0.95
PCDH9Q9HC56 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
PCDH9Q9HC56 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
PCDH9Q9HC56 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PCDH9Q9HC56 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PCDH9Q9HC56 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC20.97■□□□□ 0.95
PCDH9Q9HC56 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC20.97■□□□□ 0.95
PCDH9Q9HC56 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
PCDH9Q9HC56 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC20.97■□□□□ 0.95
PCDH9Q9HC56 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC20.96■□□□□ 0.95
PCDH9Q9HC56 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC20.96■□□□□ 0.95
PCDH9Q9HC56 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC20.96■□□□□ 0.95
PCDH9Q9HC56 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC20.96■□□□□ 0.95
PCDH9Q9HC56 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC20.96■□□□□ 0.95
PCDH9Q9HC56 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PCDH9Q9HC56 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PCDH9Q9HC56 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC20.96■□□□□ 0.95
PCDH9Q9HC56 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PCDH9Q9HC56 AC004911.1-201ENST00000416316 871 ntBASIC20.96■□□□□ 0.95
PCDH9Q9HC56 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC20.96■□□□□ 0.95
PCDH9Q9HC56 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC20.96■□□□□ 0.95
PCDH9Q9HC56 AC092666.2-201ENST00000613287 246 ntBASIC20.96■□□□□ 0.95
PCDH9Q9HC56 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC20.96■□□□□ 0.95
PCDH9Q9HC56 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC20.96■□□□□ 0.95
PCDH9Q9HC56 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
PCDH9Q9HC56 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PCDH9Q9HC56 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PCDH9Q9HC56 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PCDH9Q9HC56 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
PCDH9Q9HC56 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
PCDH9Q9HC56 BID-204ENST00000399767 2129 ntTSL 2 BASIC20.95■□□□□ 0.94
PCDH9Q9HC56 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PCDH9Q9HC56 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
PCDH9Q9HC56 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PCDH9Q9HC56 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
PCDH9Q9HC56 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC20.95■□□□□ 0.94
PCDH9Q9HC56 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
PCDH9Q9HC56 TERF1P5-201ENST00000477545 1207 ntBASIC20.95■□□□□ 0.94
PCDH9Q9HC56 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC20.95■□□□□ 0.94
PCDH9Q9HC56 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC20.95■□□□□ 0.94
PCDH9Q9HC56 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC20.95■□□□□ 0.94
PCDH9Q9HC56 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC20.95■□□□□ 0.94
PCDH9Q9HC56 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
PCDH9Q9HC56 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PCDH9Q9HC56 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC20.95■□□□□ 0.94
PCDH9Q9HC56 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PCDH9Q9HC56 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
PCDH9Q9HC56 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
PCDH9Q9HC56 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC20.95■□□□□ 0.94
PCDH9Q9HC56 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC20.95■□□□□ 0.94
PCDH9Q9HC56 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC20.95■□□□□ 0.94
PCDH9Q9HC56 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
PCDH9Q9HC56 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PCDH9Q9HC56 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC20.94■□□□□ 0.94
PCDH9Q9HC56 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
PCDH9Q9HC56 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
PCDH9Q9HC56 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC20.94■□□□□ 0.94
PCDH9Q9HC56 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PCDH9Q9HC56 TCF3P1-201ENST00000423021 1937 ntBASIC20.94■□□□□ 0.94
PCDH9Q9HC56 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PCDH9Q9HC56 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
PCDH9Q9HC56 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
PCDH9Q9HC56 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PCDH9Q9HC56 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PCDH9Q9HC56 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PCDH9Q9HC56 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC20.94■□□□□ 0.94
PCDH9Q9HC56 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC20.94■□□□□ 0.94
PCDH9Q9HC56 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC20.94■□□□□ 0.94
PCDH9Q9HC56 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC20.94■□□□□ 0.94
PCDH9Q9HC56 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
PCDH9Q9HC56 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC20.94■□□□□ 0.94
PCDH9Q9HC56 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC20.94■□□□□ 0.94
PCDH9Q9HC56 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
PCDH9Q9HC56 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
PCDH9Q9HC56 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
PCDH9Q9HC56 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC20.94■□□□□ 0.94
PCDH9Q9HC56 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
PCDH9Q9HC56 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
PCDH9Q9HC56 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC20.93■□□□□ 0.94
PCDH9Q9HC56 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
PCDH9Q9HC56 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms