Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 AC026310.3-201ENST00000625186 2373 ntBASIC21.79■■□□□ 1.08
PAAF1Q9BRP4 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
PAAF1Q9BRP4 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
PAAF1Q9BRP4 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
PAAF1Q9BRP4 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
PAAF1Q9BRP4 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
PAAF1Q9BRP4 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
PAAF1Q9BRP4 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
PAAF1Q9BRP4 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
PAAF1Q9BRP4 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
PAAF1Q9BRP4 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC21.78■■□□□ 1.08
PAAF1Q9BRP4 THEM4-205ENST00000489410 643 ntTSL 2 BASIC21.78■■□□□ 1.08
PAAF1Q9BRP4 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC21.78■■□□□ 1.08
PAAF1Q9BRP4 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
PAAF1Q9BRP4 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC21.78■■□□□ 1.08
PAAF1Q9BRP4 AC120498.8-201ENST00000614275 531 ntBASIC21.78■■□□□ 1.08
PAAF1Q9BRP4 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC21.78■■□□□ 1.08
PAAF1Q9BRP4 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
PAAF1Q9BRP4 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
PAAF1Q9BRP4 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC21.78■■□□□ 1.08
PAAF1Q9BRP4 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
PAAF1Q9BRP4 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
PAAF1Q9BRP4 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
PAAF1Q9BRP4 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC21.78■■□□□ 1.08
PAAF1Q9BRP4 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC21.78■■□□□ 1.08
PAAF1Q9BRP4 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC21.77■■□□□ 1.08
PAAF1Q9BRP4 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC21.77■■□□□ 1.08
PAAF1Q9BRP4 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
PAAF1Q9BRP4 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
PAAF1Q9BRP4 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
PAAF1Q9BRP4 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC21.77■■□□□ 1.08
PAAF1Q9BRP4 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC21.77■■□□□ 1.08
PAAF1Q9BRP4 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
PAAF1Q9BRP4 UBE2SP1-201ENST00000450587 669 ntBASIC21.77■■□□□ 1.08
PAAF1Q9BRP4 AC008550.1-201ENST00000511500 884 ntBASIC21.77■■□□□ 1.08
PAAF1Q9BRP4 FAM197Y4-202ENST00000622692 608 ntBASIC21.77■■□□□ 1.08
PAAF1Q9BRP4 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC21.77■■□□□ 1.08
PAAF1Q9BRP4 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC21.77■■□□□ 1.08
PAAF1Q9BRP4 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC21.77■■□□□ 1.08
PAAF1Q9BRP4 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
PAAF1Q9BRP4 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
PAAF1Q9BRP4 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC21.77■■□□□ 1.07
PAAF1Q9BRP4 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
PAAF1Q9BRP4 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
PAAF1Q9BRP4 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
PAAF1Q9BRP4 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC21.76■■□□□ 1.07
PAAF1Q9BRP4 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
PAAF1Q9BRP4 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
PAAF1Q9BRP4 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC21.76■■□□□ 1.07
PAAF1Q9BRP4 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
PAAF1Q9BRP4 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC21.76■■□□□ 1.07
PAAF1Q9BRP4 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC21.76■■□□□ 1.07
PAAF1Q9BRP4 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
PAAF1Q9BRP4 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
PAAF1Q9BRP4 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
PAAF1Q9BRP4 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
PAAF1Q9BRP4 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC21.76■■□□□ 1.07
PAAF1Q9BRP4 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC21.76■■□□□ 1.07
PAAF1Q9BRP4 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC21.76■■□□□ 1.07
PAAF1Q9BRP4 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC21.76■■□□□ 1.07
PAAF1Q9BRP4 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC21.76■■□□□ 1.07
PAAF1Q9BRP4 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC21.76■■□□□ 1.07
PAAF1Q9BRP4 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
PAAF1Q9BRP4 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC21.76■■□□□ 1.07
PAAF1Q9BRP4 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
PAAF1Q9BRP4 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC21.76■■□□□ 1.07
PAAF1Q9BRP4 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
PAAF1Q9BRP4 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PAAF1Q9BRP4 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
PAAF1Q9BRP4 AL121603.2-201ENST00000557373 2117 ntBASIC21.75■■□□□ 1.07
PAAF1Q9BRP4 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC21.75■■□□□ 1.07
PAAF1Q9BRP4 MTDHP1-201ENST00000605323 784 ntBASIC21.75■■□□□ 1.07
PAAF1Q9BRP4 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PAAF1Q9BRP4 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC21.75■■□□□ 1.07
PAAF1Q9BRP4 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
PAAF1Q9BRP4 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PAAF1Q9BRP4 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
PAAF1Q9BRP4 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC21.75■■□□□ 1.07
PAAF1Q9BRP4 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC21.75■■□□□ 1.07
PAAF1Q9BRP4 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
PAAF1Q9BRP4 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
PAAF1Q9BRP4 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC21.74■■□□□ 1.07
PAAF1Q9BRP4 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
PAAF1Q9BRP4 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
PAAF1Q9BRP4 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
PAAF1Q9BRP4 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
PAAF1Q9BRP4 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
PAAF1Q9BRP4 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC21.74■■□□□ 1.07
PAAF1Q9BRP4 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
PAAF1Q9BRP4 SPIB-206ENST00000596074 847 ntTSL 2 BASIC21.74■■□□□ 1.07
PAAF1Q9BRP4 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC21.74■■□□□ 1.07
PAAF1Q9BRP4 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
PAAF1Q9BRP4 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC21.74■■□□□ 1.07
PAAF1Q9BRP4 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
PAAF1Q9BRP4 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC21.74■■□□□ 1.07
PAAF1Q9BRP4 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC21.74■■□□□ 1.07
PAAF1Q9BRP4 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC21.73■■□□□ 1.07
PAAF1Q9BRP4 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
PAAF1Q9BRP4 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
PAAF1Q9BRP4 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC21.73■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms