Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
PPP4R4Q6NUP7 AL034346.1-201ENST00000568244 1277 ntBASIC19.4■□□□□ 0.7
PPP4R4Q6NUP7 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
PPP4R4Q6NUP7 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
PPP4R4Q6NUP7 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PPP4R4Q6NUP7 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PPP4R4Q6NUP7 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
PPP4R4Q6NUP7 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC19.4■□□□□ 0.7
PPP4R4Q6NUP7 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PPP4R4Q6NUP7 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC19.4■□□□□ 0.7
PPP4R4Q6NUP7 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
PPP4R4Q6NUP7 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
PPP4R4Q6NUP7 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC19.39■□□□□ 0.7
PPP4R4Q6NUP7 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC19.39■□□□□ 0.7
PPP4R4Q6NUP7 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
PPP4R4Q6NUP7 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
PPP4R4Q6NUP7 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC19.39■□□□□ 0.7
PPP4R4Q6NUP7 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PPP4R4Q6NUP7 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PPP4R4Q6NUP7 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PPP4R4Q6NUP7 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PPP4R4Q6NUP7 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PPP4R4Q6NUP7 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
PPP4R4Q6NUP7 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
PPP4R4Q6NUP7 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
PPP4R4Q6NUP7 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC19.39■□□□□ 0.69
PPP4R4Q6NUP7 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC19.39■□□□□ 0.69
PPP4R4Q6NUP7 PLD4-205ENST00000553861 667 ntTSL 2 BASIC19.39■□□□□ 0.69
PPP4R4Q6NUP7 SMUG1P1-201ENST00000590640 811 ntBASIC19.39■□□□□ 0.69
PPP4R4Q6NUP7 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
PPP4R4Q6NUP7 MCC-208ENST00000514701 2855 ntTSL 2 BASIC19.39■□□□□ 0.69
PPP4R4Q6NUP7 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC19.39■□□□□ 0.69
PPP4R4Q6NUP7 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC19.39■□□□□ 0.69
PPP4R4Q6NUP7 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PPP4R4Q6NUP7 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
PPP4R4Q6NUP7 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC19.39■□□□□ 0.69
PPP4R4Q6NUP7 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC19.39■□□□□ 0.69
PPP4R4Q6NUP7 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PPP4R4Q6NUP7 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
PPP4R4Q6NUP7 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PPP4R4Q6NUP7 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC19.38■□□□□ 0.69
PPP4R4Q6NUP7 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PPP4R4Q6NUP7 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
PPP4R4Q6NUP7 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PPP4R4Q6NUP7 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PPP4R4Q6NUP7 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
PPP4R4Q6NUP7 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC19.38■□□□□ 0.69
PPP4R4Q6NUP7 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC19.38■□□□□ 0.69
PPP4R4Q6NUP7 AC027612.3-201ENST00000413684 1047 ntBASIC19.38■□□□□ 0.69
PPP4R4Q6NUP7 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PPP4R4Q6NUP7 AC026271.2-201ENST00000428091 497 ntBASIC19.38■□□□□ 0.69
PPP4R4Q6NUP7 AC097381.1-201ENST00000429019 1296 ntBASIC19.38■□□□□ 0.69
PPP4R4Q6NUP7 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC19.38■□□□□ 0.69
PPP4R4Q6NUP7 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC19.38■□□□□ 0.69
PPP4R4Q6NUP7 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
PPP4R4Q6NUP7 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
PPP4R4Q6NUP7 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC19.38■□□□□ 0.69
PPP4R4Q6NUP7 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC19.38■□□□□ 0.69
PPP4R4Q6NUP7 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PPP4R4Q6NUP7 AC116562.4-201ENST00000641316 2276 ntBASIC19.37■□□□□ 0.69
PPP4R4Q6NUP7 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC19.37■□□□□ 0.69
PPP4R4Q6NUP7 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PPP4R4Q6NUP7 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PPP4R4Q6NUP7 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PPP4R4Q6NUP7 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
PPP4R4Q6NUP7 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PPP4R4Q6NUP7 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC19.37■□□□□ 0.69
PPP4R4Q6NUP7 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PPP4R4Q6NUP7 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PPP4R4Q6NUP7 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
PPP4R4Q6NUP7 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
PPP4R4Q6NUP7 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC19.37■□□□□ 0.69
PPP4R4Q6NUP7 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC19.37■□□□□ 0.69
PPP4R4Q6NUP7 MIR6821-201ENST00000617625 74 ntBASIC19.37■□□□□ 0.69
PPP4R4Q6NUP7 ANKRD20A6P-201ENST00000618763 204 ntBASIC19.37■□□□□ 0.69
PPP4R4Q6NUP7 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PPP4R4Q6NUP7 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC19.37■□□□□ 0.69
PPP4R4Q6NUP7 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PPP4R4Q6NUP7 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
PPP4R4Q6NUP7 STX6-204ENST00000542060 4809 ntTSL 2 BASIC19.37■□□□□ 0.69
PPP4R4Q6NUP7 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC19.37■□□□□ 0.69
PPP4R4Q6NUP7 ASL-203ENST00000380839 1765 ntTSL 5 BASIC19.37■□□□□ 0.69
PPP4R4Q6NUP7 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PPP4R4Q6NUP7 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PPP4R4Q6NUP7 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PPP4R4Q6NUP7 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC19.36■□□□□ 0.69
PPP4R4Q6NUP7 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
PPP4R4Q6NUP7 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
PPP4R4Q6NUP7 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
PPP4R4Q6NUP7 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
PPP4R4Q6NUP7 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
PPP4R4Q6NUP7 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PPP4R4Q6NUP7 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
PPP4R4Q6NUP7 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
PPP4R4Q6NUP7 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
PPP4R4Q6NUP7 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC19.36■□□□□ 0.69
PPP4R4Q6NUP7 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PPP4R4Q6NUP7 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
PPP4R4Q6NUP7 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PPP4R4Q6NUP7 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 10.3 ms