Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 REXO2-208ENST00000539754 791 ntTSL 2 BASIC21.45■■□□□ 1.02
BDNFP23560 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC21.45■■□□□ 1.02
BDNFP23560 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
BDNFP23560 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
BDNFP23560 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
BDNFP23560 FP700111.2-201ENST00000619190 1892 ntBASIC21.45■■□□□ 1.02
BDNFP23560 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC21.45■■□□□ 1.02
BDNFP23560 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
BDNFP23560 PKD1P6-201ENST00000343738 4769 ntBASIC21.44■■□□□ 1.02
BDNFP23560 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
BDNFP23560 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
BDNFP23560 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
BDNFP23560 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
BDNFP23560 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
BDNFP23560 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
BDNFP23560 KRT18P29-201ENST00000397031 1267 ntBASIC21.44■■□□□ 1.02
BDNFP23560 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC21.44■■□□□ 1.02
BDNFP23560 SERP1-205ENST00000487153 657 ntTSL 4 BASIC21.44■■□□□ 1.02
BDNFP23560 SLC29A4P2-201ENST00000504749 1089 ntBASIC21.44■■□□□ 1.02
BDNFP23560 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
BDNFP23560 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC21.44■■□□□ 1.02
BDNFP23560 ITM2C-210ENST00000620962 501 ntBASIC21.44■■□□□ 1.02
BDNFP23560 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
BDNFP23560 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
BDNFP23560 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC21.44■■□□□ 1.02
BDNFP23560 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
BDNFP23560 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
BDNFP23560 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
BDNFP23560 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
BDNFP23560 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC21.43■■□□□ 1.02
BDNFP23560 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
BDNFP23560 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
BDNFP23560 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
BDNFP23560 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC21.43■■□□□ 1.02
BDNFP23560 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
BDNFP23560 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC21.43■■□□□ 1.02
BDNFP23560 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC21.43■■□□□ 1.02
BDNFP23560 AC008403.3-201ENST00000598924 454 ntBASIC21.43■■□□□ 1.02
BDNFP23560 AC006058.3-201ENST00000606217 1069 ntBASIC21.43■■□□□ 1.02
BDNFP23560 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
BDNFP23560 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC21.43■■□□□ 1.02
BDNFP23560 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC21.43■■□□□ 1.02
BDNFP23560 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
BDNFP23560 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
BDNFP23560 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
BDNFP23560 AL137060.1-201ENST00000618151 2648 ntBASIC21.42■■□□□ 1.02
BDNFP23560 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
BDNFP23560 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
BDNFP23560 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
BDNFP23560 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
BDNFP23560 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC21.42■■□□□ 1.02
BDNFP23560 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
BDNFP23560 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC21.42■■□□□ 1.02
BDNFP23560 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC21.42■■□□□ 1.02
BDNFP23560 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC21.42■■□□□ 1.02
BDNFP23560 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
BDNFP23560 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
BDNFP23560 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
BDNFP23560 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC21.42■■□□□ 1.02
BDNFP23560 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
BDNFP23560 OR2A1-AS1-207ENST00000486094 819 ntBASIC21.42■■□□□ 1.02
BDNFP23560 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC21.42■■□□□ 1.02
BDNFP23560 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC21.42■■□□□ 1.02
BDNFP23560 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC21.41■■□□□ 1.02
BDNFP23560 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC21.41■■□□□ 1.02
BDNFP23560 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
BDNFP23560 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
BDNFP23560 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
BDNFP23560 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
BDNFP23560 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
BDNFP23560 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
BDNFP23560 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC21.41■■□□□ 1.02
BDNFP23560 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC21.41■■□□□ 1.02
BDNFP23560 UNC93B4-201ENST00000505679 747 ntBASIC21.41■■□□□ 1.02
BDNFP23560 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
BDNFP23560 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC21.41■■□□□ 1.02
BDNFP23560 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
BDNFP23560 SOX15-203ENST00000570788 1093 ntBASIC21.41■■□□□ 1.02
BDNFP23560 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
BDNFP23560 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC21.41■■□□□ 1.02
BDNFP23560 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
BDNFP23560 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC21.4■■□□□ 1.02
BDNFP23560 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
BDNFP23560 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
BDNFP23560 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC21.4■■□□□ 1.02
BDNFP23560 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
BDNFP23560 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
BDNFP23560 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC21.4■■□□□ 1.02
BDNFP23560 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC21.4■■□□□ 1.02
BDNFP23560 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
BDNFP23560 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
BDNFP23560 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC21.4■■□□□ 1.02
BDNFP23560 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
BDNFP23560 MOK-233ENST00000524214 1539 ntTSL 2 BASIC21.39■■□□□ 1.02
BDNFP23560 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC21.39■■□□□ 1.02
BDNFP23560 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC21.39■■□□□ 1.02
BDNFP23560 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
BDNFP23560 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
BDNFP23560 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.01
BDNFP23560 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms