Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC23.38■■□□□ 1.33
PCDHA1Q9Y5I3 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
PCDHA1Q9Y5I3 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC23.38■■□□□ 1.33
PCDHA1Q9Y5I3 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC23.38■■□□□ 1.33
PCDHA1Q9Y5I3 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
PCDHA1Q9Y5I3 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
PCDHA1Q9Y5I3 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC23.38■■□□□ 1.33
PCDHA1Q9Y5I3 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC23.38■■□□□ 1.33
PCDHA1Q9Y5I3 PNMA6B-201ENST00000538162 1200 ntBASIC23.38■■□□□ 1.33
PCDHA1Q9Y5I3 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
PCDHA1Q9Y5I3 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC23.38■■□□□ 1.33
PCDHA1Q9Y5I3 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
PCDHA1Q9Y5I3 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
PCDHA1Q9Y5I3 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
PCDHA1Q9Y5I3 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
PCDHA1Q9Y5I3 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC23.37■■□□□ 1.33
PCDHA1Q9Y5I3 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC23.37■■□□□ 1.33
PCDHA1Q9Y5I3 MMAB-206ENST00000540016 945 ntTSL 3 BASIC23.37■■□□□ 1.33
PCDHA1Q9Y5I3 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
PCDHA1Q9Y5I3 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC23.37■■□□□ 1.33
PCDHA1Q9Y5I3 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC23.37■■□□□ 1.33
PCDHA1Q9Y5I3 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC23.37■■□□□ 1.33
PCDHA1Q9Y5I3 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC23.37■■□□□ 1.33
PCDHA1Q9Y5I3 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC23.37■■□□□ 1.33
PCDHA1Q9Y5I3 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
PCDHA1Q9Y5I3 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
PCDHA1Q9Y5I3 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
PCDHA1Q9Y5I3 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC23.36■■□□□ 1.33
PCDHA1Q9Y5I3 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC23.36■■□□□ 1.33
PCDHA1Q9Y5I3 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC23.36■■□□□ 1.33
PCDHA1Q9Y5I3 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
PCDHA1Q9Y5I3 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
PCDHA1Q9Y5I3 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC23.36■■□□□ 1.33
PCDHA1Q9Y5I3 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
PCDHA1Q9Y5I3 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC23.36■■□□□ 1.33
PCDHA1Q9Y5I3 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
PCDHA1Q9Y5I3 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC23.36■■□□□ 1.33
PCDHA1Q9Y5I3 AL121603.2-201ENST00000557373 2117 ntBASIC23.36■■□□□ 1.33
PCDHA1Q9Y5I3 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
PCDHA1Q9Y5I3 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
PCDHA1Q9Y5I3 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC23.36■■□□□ 1.33
PCDHA1Q9Y5I3 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
PCDHA1Q9Y5I3 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
PCDHA1Q9Y5I3 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
PCDHA1Q9Y5I3 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
PCDHA1Q9Y5I3 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
PCDHA1Q9Y5I3 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC23.35■■□□□ 1.33
PCDHA1Q9Y5I3 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC23.35■■□□□ 1.33
PCDHA1Q9Y5I3 ADM-205ENST00000528544 586 ntTSL 2 BASIC23.35■■□□□ 1.33
PCDHA1Q9Y5I3 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC23.35■■□□□ 1.33
PCDHA1Q9Y5I3 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
PCDHA1Q9Y5I3 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC23.35■■□□□ 1.33
PCDHA1Q9Y5I3 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
PCDHA1Q9Y5I3 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC23.34■■□□□ 1.33
PCDHA1Q9Y5I3 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
PCDHA1Q9Y5I3 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
PCDHA1Q9Y5I3 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC23.34■■□□□ 1.33
PCDHA1Q9Y5I3 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC23.34■■□□□ 1.33
PCDHA1Q9Y5I3 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
PCDHA1Q9Y5I3 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC23.34■■□□□ 1.33
PCDHA1Q9Y5I3 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
PCDHA1Q9Y5I3 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC23.34■■□□□ 1.33
PCDHA1Q9Y5I3 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
PCDHA1Q9Y5I3 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC23.33■■□□□ 1.33
PCDHA1Q9Y5I3 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.33
PCDHA1Q9Y5I3 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC23.33■■□□□ 1.33
PCDHA1Q9Y5I3 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC23.33■■□□□ 1.33
PCDHA1Q9Y5I3 FP700111.2-201ENST00000619190 1892 ntBASIC23.33■■□□□ 1.33
PCDHA1Q9Y5I3 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
PCDHA1Q9Y5I3 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
PCDHA1Q9Y5I3 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.33
PCDHA1Q9Y5I3 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
PCDHA1Q9Y5I3 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
PCDHA1Q9Y5I3 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
PCDHA1Q9Y5I3 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
PCDHA1Q9Y5I3 SERP1-205ENST00000487153 657 ntTSL 4 BASIC23.33■■□□□ 1.33
PCDHA1Q9Y5I3 AC026366.1-201ENST00000488803 879 ntBASIC23.33■■□□□ 1.33
PCDHA1Q9Y5I3 SLC29A4P2-201ENST00000504749 1089 ntBASIC23.33■■□□□ 1.33
PCDHA1Q9Y5I3 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
PCDHA1Q9Y5I3 AP003097.1-201ENST00000530657 1135 ntBASIC23.33■■□□□ 1.33
PCDHA1Q9Y5I3 REXO2-208ENST00000539754 791 ntTSL 2 BASIC23.33■■□□□ 1.33
PCDHA1Q9Y5I3 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC23.33■■□□□ 1.33
PCDHA1Q9Y5I3 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
PCDHA1Q9Y5I3 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC23.33■■□□□ 1.33
PCDHA1Q9Y5I3 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
PCDHA1Q9Y5I3 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC23.33■■□□□ 1.32
PCDHA1Q9Y5I3 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
PCDHA1Q9Y5I3 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
PCDHA1Q9Y5I3 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
PCDHA1Q9Y5I3 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC23.32■■□□□ 1.32
PCDHA1Q9Y5I3 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC23.32■■□□□ 1.32
PCDHA1Q9Y5I3 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
PCDHA1Q9Y5I3 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC23.32■■□□□ 1.32
PCDHA1Q9Y5I3 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
PCDHA1Q9Y5I3 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
PCDHA1Q9Y5I3 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
PCDHA1Q9Y5I3 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
PCDHA1Q9Y5I3 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC23.32■■□□□ 1.32
PCDHA1Q9Y5I3 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
PCDHA1Q9Y5I3 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC23.32■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms