Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
PPP4R4Q6NUP7 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
PPP4R4Q6NUP7 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PPP4R4Q6NUP7 MPST-204ENST00000404393 1329 ntTSL 5 BASIC19.45■□□□□ 0.7
PPP4R4Q6NUP7 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
PPP4R4Q6NUP7 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PPP4R4Q6NUP7 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PPP4R4Q6NUP7 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PPP4R4Q6NUP7 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PPP4R4Q6NUP7 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC19.44■□□□□ 0.7
PPP4R4Q6NUP7 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PPP4R4Q6NUP7 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PPP4R4Q6NUP7 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PPP4R4Q6NUP7 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PPP4R4Q6NUP7 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PPP4R4Q6NUP7 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PPP4R4Q6NUP7 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PPP4R4Q6NUP7 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
PPP4R4Q6NUP7 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PPP4R4Q6NUP7 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
PPP4R4Q6NUP7 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
PPP4R4Q6NUP7 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PPP4R4Q6NUP7 MFF-208ENST00000409616 1247 ntTSL 5 BASIC19.44■□□□□ 0.7
PPP4R4Q6NUP7 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
PPP4R4Q6NUP7 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC19.44■□□□□ 0.7
PPP4R4Q6NUP7 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
PPP4R4Q6NUP7 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC19.44■□□□□ 0.7
PPP4R4Q6NUP7 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PPP4R4Q6NUP7 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
PPP4R4Q6NUP7 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
PPP4R4Q6NUP7 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PPP4R4Q6NUP7 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
PPP4R4Q6NUP7 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PPP4R4Q6NUP7 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC19.43■□□□□ 0.7
PPP4R4Q6NUP7 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
PPP4R4Q6NUP7 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC19.43■□□□□ 0.7
PPP4R4Q6NUP7 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC19.43■□□□□ 0.7
PPP4R4Q6NUP7 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PPP4R4Q6NUP7 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
PPP4R4Q6NUP7 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PPP4R4Q6NUP7 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
PPP4R4Q6NUP7 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC19.43■□□□□ 0.7
PPP4R4Q6NUP7 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC19.43■□□□□ 0.7
PPP4R4Q6NUP7 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
PPP4R4Q6NUP7 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC19.43■□□□□ 0.7
PPP4R4Q6NUP7 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
PPP4R4Q6NUP7 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
PPP4R4Q6NUP7 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PPP4R4Q6NUP7 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
PPP4R4Q6NUP7 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PPP4R4Q6NUP7 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
PPP4R4Q6NUP7 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
PPP4R4Q6NUP7 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC19.42■□□□□ 0.7
PPP4R4Q6NUP7 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
PPP4R4Q6NUP7 BID-203ENST00000399765 1879 ntTSL 2 BASIC19.42■□□□□ 0.7
PPP4R4Q6NUP7 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
PPP4R4Q6NUP7 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC19.42■□□□□ 0.7
PPP4R4Q6NUP7 MIR5787-201ENST00000611784 55 ntBASIC19.42■□□□□ 0.7
PPP4R4Q6NUP7 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC19.42■□□□□ 0.7
PPP4R4Q6NUP7 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PPP4R4Q6NUP7 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC19.42■□□□□ 0.7
PPP4R4Q6NUP7 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
PPP4R4Q6NUP7 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
PPP4R4Q6NUP7 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC19.42■□□□□ 0.7
PPP4R4Q6NUP7 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC19.42■□□□□ 0.7
PPP4R4Q6NUP7 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PPP4R4Q6NUP7 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
PPP4R4Q6NUP7 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PPP4R4Q6NUP7 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
PPP4R4Q6NUP7 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PPP4R4Q6NUP7 YBX1P1-201ENST00000445822 960 ntBASIC19.41■□□□□ 0.7
PPP4R4Q6NUP7 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC19.41■□□□□ 0.7
PPP4R4Q6NUP7 AC087623.3-201ENST00000607047 1098 ntBASIC19.41■□□□□ 0.7
PPP4R4Q6NUP7 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC19.41■□□□□ 0.7
PPP4R4Q6NUP7 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PPP4R4Q6NUP7 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
PPP4R4Q6NUP7 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
PPP4R4Q6NUP7 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
PPP4R4Q6NUP7 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
PPP4R4Q6NUP7 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
PPP4R4Q6NUP7 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
PPP4R4Q6NUP7 AC098818.2-201ENST00000564925 2320 ntBASIC19.41■□□□□ 0.7
PPP4R4Q6NUP7 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
PPP4R4Q6NUP7 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
PPP4R4Q6NUP7 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
PPP4R4Q6NUP7 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC19.41■□□□□ 0.7
PPP4R4Q6NUP7 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
PPP4R4Q6NUP7 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
PPP4R4Q6NUP7 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
PPP4R4Q6NUP7 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PPP4R4Q6NUP7 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
PPP4R4Q6NUP7 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PPP4R4Q6NUP7 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PPP4R4Q6NUP7 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC19.4■□□□□ 0.7
PPP4R4Q6NUP7 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PPP4R4Q6NUP7 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PPP4R4Q6NUP7 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC19.4■□□□□ 0.7
PPP4R4Q6NUP7 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PPP4R4Q6NUP7 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PPP4R4Q6NUP7 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms