Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
KRT39Q6A163 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC22.01■■□□□ 1.11
KRT39Q6A163 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC22.01■■□□□ 1.11
KRT39Q6A163 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
KRT39Q6A163 AC133552.2-202ENST00000575694 574 ntBASIC22.01■■□□□ 1.11
KRT39Q6A163 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC22.01■■□□□ 1.11
KRT39Q6A163 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC22.01■■□□□ 1.11
KRT39Q6A163 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
KRT39Q6A163 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC22.01■■□□□ 1.11
KRT39Q6A163 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
KRT39Q6A163 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC22.01■■□□□ 1.11
KRT39Q6A163 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
KRT39Q6A163 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
KRT39Q6A163 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
KRT39Q6A163 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
KRT39Q6A163 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC22■■□□□ 1.11
KRT39Q6A163 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC22■■□□□ 1.11
KRT39Q6A163 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC22■■□□□ 1.11
KRT39Q6A163 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC22■■□□□ 1.11
KRT39Q6A163 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
KRT39Q6A163 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC22■■□□□ 1.11
KRT39Q6A163 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC22■■□□□ 1.11
KRT39Q6A163 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC22■■□□□ 1.11
KRT39Q6A163 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
KRT39Q6A163 MIR663A-201ENST00000385250 93 ntBASIC22■■□□□ 1.11
KRT39Q6A163 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC22■■□□□ 1.11
KRT39Q6A163 CROCCP5-201ENST00000436658 830 ntBASIC22■■□□□ 1.11
KRT39Q6A163 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC22■■□□□ 1.11
KRT39Q6A163 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC22■■□□□ 1.11
KRT39Q6A163 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC22■■□□□ 1.11
KRT39Q6A163 AL050303.2-201ENST00000619798 666 ntBASIC22■■□□□ 1.11
KRT39Q6A163 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC22■■□□□ 1.11
KRT39Q6A163 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC22■■□□□ 1.11
KRT39Q6A163 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
KRT39Q6A163 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
KRT39Q6A163 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC22■■□□□ 1.11
KRT39Q6A163 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC22■■□□□ 1.11
KRT39Q6A163 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
KRT39Q6A163 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
KRT39Q6A163 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
KRT39Q6A163 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
KRT39Q6A163 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC21.99■■□□□ 1.11
KRT39Q6A163 AC010980.2-201ENST00000587099 1412 ntBASIC21.99■■□□□ 1.11
KRT39Q6A163 DET1-207ENST00000564406 2315 ntTSL 2 BASIC21.99■■□□□ 1.11
KRT39Q6A163 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC21.99■■□□□ 1.11
KRT39Q6A163 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC21.99■■□□□ 1.11
KRT39Q6A163 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
KRT39Q6A163 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC21.99■■□□□ 1.11
KRT39Q6A163 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
KRT39Q6A163 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC21.99■■□□□ 1.11
KRT39Q6A163 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC21.99■■□□□ 1.11
KRT39Q6A163 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC21.99■■□□□ 1.11
KRT39Q6A163 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC21.99■■□□□ 1.11
KRT39Q6A163 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
KRT39Q6A163 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
KRT39Q6A163 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC21.98■■□□□ 1.11
KRT39Q6A163 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC21.98■■□□□ 1.11
KRT39Q6A163 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
KRT39Q6A163 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC21.98■■□□□ 1.11
KRT39Q6A163 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC21.98■■□□□ 1.11
KRT39Q6A163 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
KRT39Q6A163 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC21.98■■□□□ 1.11
KRT39Q6A163 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
KRT39Q6A163 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC21.98■■□□□ 1.11
KRT39Q6A163 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC21.98■■□□□ 1.11
KRT39Q6A163 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC21.98■■□□□ 1.11
KRT39Q6A163 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC21.98■■□□□ 1.11
KRT39Q6A163 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
KRT39Q6A163 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC21.98■■□□□ 1.11
KRT39Q6A163 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
KRT39Q6A163 AC093787.1-201ENST00000450396 207 ntBASIC21.98■■□□□ 1.11
KRT39Q6A163 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
KRT39Q6A163 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
KRT39Q6A163 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC21.98■■□□□ 1.11
KRT39Q6A163 CYP2T3P-201ENST00000601990 817 ntBASIC21.98■■□□□ 1.11
KRT39Q6A163 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
KRT39Q6A163 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC21.98■■□□□ 1.11
KRT39Q6A163 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC21.98■■□□□ 1.11
KRT39Q6A163 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
KRT39Q6A163 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
KRT39Q6A163 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
KRT39Q6A163 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
KRT39Q6A163 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
KRT39Q6A163 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
KRT39Q6A163 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
KRT39Q6A163 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC21.98■■□□□ 1.11
KRT39Q6A163 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
KRT39Q6A163 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC21.97■■□□□ 1.11
KRT39Q6A163 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
KRT39Q6A163 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC21.97■■□□□ 1.11
KRT39Q6A163 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
KRT39Q6A163 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC21.97■■□□□ 1.11
KRT39Q6A163 KRT18P68-201ENST00000392293 1000 ntBASIC21.97■■□□□ 1.11
KRT39Q6A163 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC21.97■■□□□ 1.11
KRT39Q6A163 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
KRT39Q6A163 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC21.97■■□□□ 1.11
KRT39Q6A163 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC21.97■■□□□ 1.11
KRT39Q6A163 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
KRT39Q6A163 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC21.97■■□□□ 1.11
KRT39Q6A163 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC21.97■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms