Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
CX3CR1P49238 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
CX3CR1P49238 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CX3CR1P49238 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
CX3CR1P49238 AC092720.2-201ENST00000602388 1665 ntBASIC17.87■□□□□ 0.45
CX3CR1P49238 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC17.86■□□□□ 0.45
CX3CR1P49238 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC17.86■□□□□ 0.45
CX3CR1P49238 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
CX3CR1P49238 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CX3CR1P49238 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CX3CR1P49238 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC17.86■□□□□ 0.45
CX3CR1P49238 AC091799.1-201ENST00000422823 811 ntBASIC17.86■□□□□ 0.45
CX3CR1P49238 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC17.86■□□□□ 0.45
CX3CR1P49238 UBE2DNL-204ENST00000602536 740 ntBASIC17.86■□□□□ 0.45
CX3CR1P49238 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CX3CR1P49238 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
CX3CR1P49238 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CX3CR1P49238 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
CX3CR1P49238 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CX3CR1P49238 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC17.86■□□□□ 0.45
CX3CR1P49238 AC007952.6-201ENST00000573168 2673 ntBASIC17.85■□□□□ 0.45
CX3CR1P49238 AC003957.1-201ENST00000625108 2673 ntBASIC17.85■□□□□ 0.45
CX3CR1P49238 AC138932.1-201ENST00000534164 6830 ntBASIC17.85■□□□□ 0.45
CX3CR1P49238 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CX3CR1P49238 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
CX3CR1P49238 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
CX3CR1P49238 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CX3CR1P49238 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
CX3CR1P49238 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CX3CR1P49238 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
CX3CR1P49238 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC17.85■□□□□ 0.45
CX3CR1P49238 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
CX3CR1P49238 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CX3CR1P49238 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC17.85■□□□□ 0.45
CX3CR1P49238 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC17.85■□□□□ 0.45
CX3CR1P49238 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC17.85■□□□□ 0.45
CX3CR1P49238 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
CX3CR1P49238 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC17.85■□□□□ 0.45
CX3CR1P49238 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC17.85■□□□□ 0.45
CX3CR1P49238 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
CX3CR1P49238 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC17.85■□□□□ 0.45
CX3CR1P49238 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
CX3CR1P49238 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
CX3CR1P49238 ADM-207ENST00000530439 1839 ntTSL 2 BASIC17.85■□□□□ 0.45
CX3CR1P49238 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CX3CR1P49238 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC17.85■□□□□ 0.45
CX3CR1P49238 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC17.85■□□□□ 0.45
CX3CR1P49238 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
CX3CR1P49238 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CX3CR1P49238 MIR2861-201ENST00000636310 90 ntBASIC17.85■□□□□ 0.45
CX3CR1P49238 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC17.84■□□□□ 0.45
CX3CR1P49238 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CX3CR1P49238 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
CX3CR1P49238 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CX3CR1P49238 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CX3CR1P49238 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
CX3CR1P49238 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CX3CR1P49238 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
CX3CR1P49238 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CX3CR1P49238 AC007322.3-201ENST00000426526 701 ntBASIC17.84■□□□□ 0.45
CX3CR1P49238 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC17.84■□□□□ 0.45
CX3CR1P49238 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CX3CR1P49238 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
CX3CR1P49238 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CX3CR1P49238 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
CX3CR1P49238 AL512408.1-201ENST00000569378 2000 ntBASIC17.84■□□□□ 0.45
CX3CR1P49238 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CX3CR1P49238 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
CX3CR1P49238 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
CX3CR1P49238 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC17.84■□□□□ 0.45
CX3CR1P49238 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC17.84■□□□□ 0.45
CX3CR1P49238 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
CX3CR1P49238 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC17.83■□□□□ 0.45
CX3CR1P49238 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
CX3CR1P49238 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CX3CR1P49238 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
CX3CR1P49238 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CX3CR1P49238 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
CX3CR1P49238 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CX3CR1P49238 AL391422.3-201ENST00000603791 2761 ntBASIC17.83■□□□□ 0.45
CX3CR1P49238 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CX3CR1P49238 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC17.83■□□□□ 0.44
CX3CR1P49238 HACD1-201ENST00000326961 773 ntTSL 2 BASIC17.83■□□□□ 0.44
CX3CR1P49238 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CX3CR1P49238 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
CX3CR1P49238 AC034268.1-201ENST00000441047 882 ntBASIC17.83■□□□□ 0.44
CX3CR1P49238 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC17.83■□□□□ 0.44
CX3CR1P49238 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CX3CR1P49238 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC17.83■□□□□ 0.44
CX3CR1P49238 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CX3CR1P49238 NTF6G-201ENST00000591094 616 ntBASIC17.83■□□□□ 0.44
CX3CR1P49238 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC17.83■□□□□ 0.44
CX3CR1P49238 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC17.83■□□□□ 0.44
CX3CR1P49238 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
CX3CR1P49238 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC17.83■□□□□ 0.44
CX3CR1P49238 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CX3CR1P49238 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
CX3CR1P49238 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC17.82■□□□□ 0.44
CX3CR1P49238 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CX3CR1P49238 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 62.8 ms