Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC19.7■□□□□ 0.74
CLDN9O95484 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CLDN9O95484 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC19.7■□□□□ 0.74
CLDN9O95484 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC19.7■□□□□ 0.74
CLDN9O95484 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
CLDN9O95484 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CLDN9O95484 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC19.7■□□□□ 0.74
CLDN9O95484 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC19.7■□□□□ 0.74
CLDN9O95484 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC19.7■□□□□ 0.74
CLDN9O95484 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC19.7■□□□□ 0.74
CLDN9O95484 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC19.69■□□□□ 0.74
CLDN9O95484 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC19.69■□□□□ 0.74
CLDN9O95484 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLDN9O95484 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
CLDN9O95484 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CLDN9O95484 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLDN9O95484 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLDN9O95484 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLDN9O95484 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC19.69■□□□□ 0.74
CLDN9O95484 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
CLDN9O95484 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC19.69■□□□□ 0.74
CLDN9O95484 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
CLDN9O95484 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLDN9O95484 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC19.69■□□□□ 0.74
CLDN9O95484 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLDN9O95484 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CLDN9O95484 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC19.69■□□□□ 0.74
CLDN9O95484 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLDN9O95484 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC19.69■□□□□ 0.74
CLDN9O95484 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLDN9O95484 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC19.69■□□□□ 0.74
CLDN9O95484 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC19.69■□□□□ 0.74
CLDN9O95484 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLDN9O95484 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLDN9O95484 KRT8P36-201ENST00000489121 1440 ntBASIC19.68■□□□□ 0.74
CLDN9O95484 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC19.68■□□□□ 0.74
CLDN9O95484 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC19.68■□□□□ 0.74
CLDN9O95484 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CLDN9O95484 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLDN9O95484 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CLDN9O95484 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLDN9O95484 KRT18P5-201ENST00000436075 1291 ntBASIC19.68■□□□□ 0.74
CLDN9O95484 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CLDN9O95484 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC19.68■□□□□ 0.74
CLDN9O95484 SPI1-203ENST00000533030 661 ntTSL 2 BASIC19.68■□□□□ 0.74
CLDN9O95484 AC137761.2-201ENST00000561729 223 ntBASIC19.68■□□□□ 0.74
CLDN9O95484 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC19.68■□□□□ 0.74
CLDN9O95484 AC145350.3-201ENST00000569033 163 ntBASIC19.68■□□□□ 0.74
CLDN9O95484 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
CLDN9O95484 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC19.68■□□□□ 0.74
CLDN9O95484 AL591742.1-201ENST00000604433 565 ntBASIC19.68■□□□□ 0.74
CLDN9O95484 AL391422.3-201ENST00000603791 2761 ntBASIC19.68■□□□□ 0.74
CLDN9O95484 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLDN9O95484 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC19.68■□□□□ 0.74
CLDN9O95484 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLDN9O95484 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
CLDN9O95484 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLDN9O95484 USP39-204ENST00000409766 2033 ntTSL 2 BASIC19.68■□□□□ 0.74
CLDN9O95484 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC19.68■□□□□ 0.74
CLDN9O95484 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CLDN9O95484 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
CLDN9O95484 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC19.67■□□□□ 0.74
CLDN9O95484 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC19.67■□□□□ 0.74
CLDN9O95484 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CLDN9O95484 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CLDN9O95484 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
CLDN9O95484 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC19.67■□□□□ 0.74
CLDN9O95484 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
CLDN9O95484 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CLDN9O95484 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC19.67■□□□□ 0.74
CLDN9O95484 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC19.67■□□□□ 0.74
CLDN9O95484 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CLDN9O95484 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
CLDN9O95484 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC19.67■□□□□ 0.74
CLDN9O95484 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CLDN9O95484 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CLDN9O95484 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CLDN9O95484 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CLDN9O95484 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CLDN9O95484 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CLDN9O95484 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
CLDN9O95484 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC19.66■□□□□ 0.74
CLDN9O95484 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
CLDN9O95484 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC19.66■□□□□ 0.74
CLDN9O95484 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC19.66■□□□□ 0.74
CLDN9O95484 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC19.66■□□□□ 0.74
CLDN9O95484 BMP1-204ENST00000397814 836 ntTSL 4 BASIC19.66■□□□□ 0.74
CLDN9O95484 GXYLT1P2-201ENST00000433312 1230 ntBASIC19.66■□□□□ 0.74
CLDN9O95484 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC19.66■□□□□ 0.74
CLDN9O95484 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC19.66■□□□□ 0.74
CLDN9O95484 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CLDN9O95484 AC099778.1-201ENST00000568593 1911 ntBASIC19.66■□□□□ 0.74
CLDN9O95484 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CLDN9O95484 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC19.65■□□□□ 0.74
CLDN9O95484 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC19.65■□□□□ 0.74
CLDN9O95484 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CLDN9O95484 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CLDN9O95484 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC19.65■□□□□ 0.74
CLDN9O95484 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
CLDN9O95484 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms