Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC30.9■■■□□ 2.54
RAPGEF3O95398 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC30.9■■■□□ 2.54
RAPGEF3O95398 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC30.9■■■□□ 2.54
RAPGEF3O95398 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC30.9■■■□□ 2.54
RAPGEF3O95398 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC30.9■■■□□ 2.54
RAPGEF3O95398 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC30.9■■■□□ 2.54
RAPGEF3O95398 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
RAPGEF3O95398 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
RAPGEF3O95398 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC30.89■■■□□ 2.54
RAPGEF3O95398 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC30.89■■■□□ 2.54
RAPGEF3O95398 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC30.89■■■□□ 2.54
RAPGEF3O95398 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
RAPGEF3O95398 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC30.89■■■□□ 2.54
RAPGEF3O95398 TOLLIP-AS1-201ENST00000530897 939 ntBASIC30.89■■■□□ 2.54
RAPGEF3O95398 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC30.89■■■□□ 2.54
RAPGEF3O95398 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC30.89■■■□□ 2.54
RAPGEF3O95398 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC30.89■■■□□ 2.54
RAPGEF3O95398 AL358472.4-201ENST00000633140 710 ntBASIC30.89■■■□□ 2.54
RAPGEF3O95398 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
RAPGEF3O95398 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
RAPGEF3O95398 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
RAPGEF3O95398 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC30.89■■■□□ 2.54
RAPGEF3O95398 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.53
RAPGEF3O95398 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC30.89■■■□□ 2.53
RAPGEF3O95398 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC30.89■■■□□ 2.53
RAPGEF3O95398 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC30.88■■■□□ 2.53
RAPGEF3O95398 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC30.88■■■□□ 2.53
RAPGEF3O95398 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC30.88■■■□□ 2.53
RAPGEF3O95398 METTL23-204ENST00000586752 904 ntTSL 2 BASIC30.88■■■□□ 2.53
RAPGEF3O95398 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC30.88■■■□□ 2.53
RAPGEF3O95398 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC30.88■■■□□ 2.53
RAPGEF3O95398 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC30.88■■■□□ 2.53
RAPGEF3O95398 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC30.88■■■□□ 2.53
RAPGEF3O95398 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC30.88■■■□□ 2.53
RAPGEF3O95398 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC30.88■■■□□ 2.53
RAPGEF3O95398 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
RAPGEF3O95398 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC30.87■■■□□ 2.53
RAPGEF3O95398 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC30.87■■■□□ 2.53
RAPGEF3O95398 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC30.87■■■□□ 2.53
RAPGEF3O95398 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC30.87■■■□□ 2.53
RAPGEF3O95398 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC30.87■■■□□ 2.53
RAPGEF3O95398 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC30.87■■■□□ 2.53
RAPGEF3O95398 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
RAPGEF3O95398 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC30.87■■■□□ 2.53
RAPGEF3O95398 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
RAPGEF3O95398 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC30.86■■■□□ 2.53
RAPGEF3O95398 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC30.86■■■□□ 2.53
RAPGEF3O95398 PGM5P4-201ENST00000421970 445 ntBASIC30.86■■■□□ 2.53
RAPGEF3O95398 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC30.86■■■□□ 2.53
RAPGEF3O95398 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC30.86■■■□□ 2.53
RAPGEF3O95398 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC30.86■■■□□ 2.53
RAPGEF3O95398 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC30.86■■■□□ 2.53
RAPGEF3O95398 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
RAPGEF3O95398 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
RAPGEF3O95398 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC30.86■■■□□ 2.53
RAPGEF3O95398 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
RAPGEF3O95398 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC30.85■■■□□ 2.53
RAPGEF3O95398 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC30.85■■■□□ 2.53
RAPGEF3O95398 AP002982.1-201ENST00000492365 877 ntBASIC30.85■■■□□ 2.53
RAPGEF3O95398 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC30.85■■■□□ 2.53
RAPGEF3O95398 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC30.85■■■□□ 2.53
RAPGEF3O95398 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC30.85■■■□□ 2.53
RAPGEF3O95398 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC30.85■■■□□ 2.53
RAPGEF3O95398 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC30.84■■■□□ 2.53
RAPGEF3O95398 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC30.84■■■□□ 2.53
RAPGEF3O95398 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC30.84■■■□□ 2.53
RAPGEF3O95398 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC30.84■■■□□ 2.53
RAPGEF3O95398 ISCU-203ENST00000431221 799 ntTSL 2 BASIC30.84■■■□□ 2.53
RAPGEF3O95398 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC30.84■■■□□ 2.53
RAPGEF3O95398 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
RAPGEF3O95398 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC30.84■■■□□ 2.53
RAPGEF3O95398 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC30.84■■■□□ 2.53
RAPGEF3O95398 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC30.84■■■□□ 2.53
RAPGEF3O95398 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC30.83■■■□□ 2.53
RAPGEF3O95398 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC30.83■■■□□ 2.53
RAPGEF3O95398 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC30.83■■■□□ 2.53
RAPGEF3O95398 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
RAPGEF3O95398 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC30.83■■■□□ 2.53
RAPGEF3O95398 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC30.83■■■□□ 2.53
RAPGEF3O95398 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC30.83■■■□□ 2.53
RAPGEF3O95398 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
RAPGEF3O95398 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
RAPGEF3O95398 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC30.83■■■□□ 2.53
RAPGEF3O95398 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC30.82■■■□□ 2.53
RAPGEF3O95398 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
RAPGEF3O95398 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC30.82■■■□□ 2.52
RAPGEF3O95398 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC30.82■■■□□ 2.52
RAPGEF3O95398 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
RAPGEF3O95398 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC30.82■■■□□ 2.52
RAPGEF3O95398 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC30.82■■■□□ 2.52
RAPGEF3O95398 KRT126P-201ENST00000549467 1181 ntBASIC30.82■■■□□ 2.52
RAPGEF3O95398 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC30.82■■■□□ 2.52
RAPGEF3O95398 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC30.82■■■□□ 2.52
RAPGEF3O95398 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
RAPGEF3O95398 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
RAPGEF3O95398 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
RAPGEF3O95398 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC30.81■■■□□ 2.52
RAPGEF3O95398 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC30.81■■■□□ 2.52
RAPGEF3O95398 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC30.81■■■□□ 2.52
RAPGEF3O95398 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
Retrieved 100 of 98,524 protein–RNA pairs in 15.1 ms