Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PCDHGA1Q9Y5H4 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
PCDHGA1Q9Y5H4 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
PCDHGA1Q9Y5H4 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC19.69■□□□□ 0.74
PCDHGA1Q9Y5H4 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
PCDHGA1Q9Y5H4 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC19.69■□□□□ 0.74
PCDHGA1Q9Y5H4 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
PCDHGA1Q9Y5H4 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC19.69■□□□□ 0.74
PCDHGA1Q9Y5H4 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PCDHGA1Q9Y5H4 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
PCDHGA1Q9Y5H4 RCN1P1-201ENST00000400413 996 ntBASIC19.69■□□□□ 0.74
PCDHGA1Q9Y5H4 PENK-204ENST00000518770 863 ntTSL 2 BASIC19.69■□□□□ 0.74
PCDHGA1Q9Y5H4 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC19.69■□□□□ 0.74
PCDHGA1Q9Y5H4 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC19.69■□□□□ 0.74
PCDHGA1Q9Y5H4 AL355075.4-201ENST00000554988 638 ntBASIC19.69■□□□□ 0.74
PCDHGA1Q9Y5H4 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC19.69■□□□□ 0.74
PCDHGA1Q9Y5H4 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PCDHGA1Q9Y5H4 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PCDHGA1Q9Y5H4 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC19.69■□□□□ 0.74
PCDHGA1Q9Y5H4 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
PCDHGA1Q9Y5H4 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
PCDHGA1Q9Y5H4 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC19.68■□□□□ 0.74
PCDHGA1Q9Y5H4 AC127496.7-201ENST00000625110 1798 ntBASIC19.68■□□□□ 0.74
PCDHGA1Q9Y5H4 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
PCDHGA1Q9Y5H4 TSPY15P-201ENST00000457163 923 ntBASIC19.68■□□□□ 0.74
PCDHGA1Q9Y5H4 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC19.68■□□□□ 0.74
PCDHGA1Q9Y5H4 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
PCDHGA1Q9Y5H4 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
PCDHGA1Q9Y5H4 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC19.68■□□□□ 0.74
PCDHGA1Q9Y5H4 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
PCDHGA1Q9Y5H4 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
PCDHGA1Q9Y5H4 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
PCDHGA1Q9Y5H4 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
PCDHGA1Q9Y5H4 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
PCDHGA1Q9Y5H4 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
PCDHGA1Q9Y5H4 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PCDHGA1Q9Y5H4 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC19.67■□□□□ 0.74
PCDHGA1Q9Y5H4 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
PCDHGA1Q9Y5H4 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC19.67■□□□□ 0.74
PCDHGA1Q9Y5H4 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
PCDHGA1Q9Y5H4 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
PCDHGA1Q9Y5H4 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC19.67■□□□□ 0.74
PCDHGA1Q9Y5H4 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC19.66■□□□□ 0.74
PCDHGA1Q9Y5H4 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC19.66■□□□□ 0.74
PCDHGA1Q9Y5H4 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC19.66■□□□□ 0.74
PCDHGA1Q9Y5H4 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PCDHGA1Q9Y5H4 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
PCDHGA1Q9Y5H4 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
PCDHGA1Q9Y5H4 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
PCDHGA1Q9Y5H4 CD177P1-201ENST00000606252 935 ntBASIC19.66■□□□□ 0.74
PCDHGA1Q9Y5H4 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PCDHGA1Q9Y5H4 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
PCDHGA1Q9Y5H4 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PCDHGA1Q9Y5H4 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
PCDHGA1Q9Y5H4 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
PCDHGA1Q9Y5H4 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PCDHGA1Q9Y5H4 MOK-233ENST00000524214 1539 ntTSL 2 BASIC19.66■□□□□ 0.74
PCDHGA1Q9Y5H4 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PCDHGA1Q9Y5H4 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC19.66■□□□□ 0.74
PCDHGA1Q9Y5H4 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PCDHGA1Q9Y5H4 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
PCDHGA1Q9Y5H4 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PCDHGA1Q9Y5H4 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PCDHGA1Q9Y5H4 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
PCDHGA1Q9Y5H4 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC19.65■□□□□ 0.74
PCDHGA1Q9Y5H4 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
PCDHGA1Q9Y5H4 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
PCDHGA1Q9Y5H4 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
PCDHGA1Q9Y5H4 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PCDHGA1Q9Y5H4 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
PCDHGA1Q9Y5H4 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
PCDHGA1Q9Y5H4 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.74
PCDHGA1Q9Y5H4 ME2-208ENST00000638937 2471 ntTSL 5 BASIC19.64■□□□□ 0.74
PCDHGA1Q9Y5H4 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
PCDHGA1Q9Y5H4 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
PCDHGA1Q9Y5H4 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC19.64■□□□□ 0.73
PCDHGA1Q9Y5H4 AC026471.5-201ENST00000615068 467 ntBASIC19.64■□□□□ 0.73
PCDHGA1Q9Y5H4 AL356652.1-201ENST00000615962 565 ntBASIC19.64■□□□□ 0.73
PCDHGA1Q9Y5H4 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
PCDHGA1Q9Y5H4 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
PCDHGA1Q9Y5H4 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
PCDHGA1Q9Y5H4 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
PCDHGA1Q9Y5H4 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC19.64■□□□□ 0.73
PCDHGA1Q9Y5H4 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC19.64■□□□□ 0.73
PCDHGA1Q9Y5H4 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
PCDHGA1Q9Y5H4 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC19.64■□□□□ 0.73
PCDHGA1Q9Y5H4 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
PCDHGA1Q9Y5H4 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC19.64■□□□□ 0.73
PCDHGA1Q9Y5H4 FAM99A-202ENST00000538190 1989 ntBASIC19.64■□□□□ 0.73
PCDHGA1Q9Y5H4 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
PCDHGA1Q9Y5H4 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC19.64■□□□□ 0.73
PCDHGA1Q9Y5H4 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
PCDHGA1Q9Y5H4 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PCDHGA1Q9Y5H4 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PCDHGA1Q9Y5H4 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
PCDHGA1Q9Y5H4 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
PCDHGA1Q9Y5H4 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
PCDHGA1Q9Y5H4 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC19.63■□□□□ 0.73
PCDHGA1Q9Y5H4 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC19.63■□□□□ 0.73
PCDHGA1Q9Y5H4 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms