Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
FOXA2Q9Y261 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
FOXA2Q9Y261 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC16.49■□□□□ 0.23
FOXA2Q9Y261 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
FOXA2Q9Y261 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
FOXA2Q9Y261 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
FOXA2Q9Y261 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
FOXA2Q9Y261 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC16.49■□□□□ 0.23
FOXA2Q9Y261 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
FOXA2Q9Y261 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
FOXA2Q9Y261 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC16.49■□□□□ 0.23
FOXA2Q9Y261 DBI-210ENST00000542275 757 ntTSL 5 BASIC16.49■□□□□ 0.23
FOXA2Q9Y261 KRT18P20-201ENST00000548986 1279 ntBASIC16.49■□□□□ 0.23
FOXA2Q9Y261 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
FOXA2Q9Y261 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
FOXA2Q9Y261 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC16.49■□□□□ 0.23
FOXA2Q9Y261 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
FOXA2Q9Y261 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC16.49■□□□□ 0.23
FOXA2Q9Y261 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC16.49■□□□□ 0.23
FOXA2Q9Y261 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
FOXA2Q9Y261 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC16.48■□□□□ 0.23
FOXA2Q9Y261 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC16.48■□□□□ 0.23
FOXA2Q9Y261 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
FOXA2Q9Y261 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
FOXA2Q9Y261 KRT16P2-201ENST00000414673 1423 ntBASIC16.48■□□□□ 0.23
FOXA2Q9Y261 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC16.48■□□□□ 0.23
FOXA2Q9Y261 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
FOXA2Q9Y261 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
FOXA2Q9Y261 AC016769.1-201ENST00000409132 1010 ntBASIC16.48■□□□□ 0.23
FOXA2Q9Y261 GLI3-203ENST00000437480 451 ntTSL 2 BASIC16.48■□□□□ 0.23
FOXA2Q9Y261 AC245052.3-201ENST00000450182 901 ntBASIC16.48■□□□□ 0.23
FOXA2Q9Y261 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC16.48■□□□□ 0.23
FOXA2Q9Y261 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
FOXA2Q9Y261 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC16.48■□□□□ 0.23
FOXA2Q9Y261 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
FOXA2Q9Y261 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
FOXA2Q9Y261 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
FOXA2Q9Y261 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC16.48■□□□□ 0.23
FOXA2Q9Y261 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
FOXA2Q9Y261 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
FOXA2Q9Y261 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC16.47■□□□□ 0.23
FOXA2Q9Y261 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC16.47■□□□□ 0.23
FOXA2Q9Y261 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC16.47■□□□□ 0.23
FOXA2Q9Y261 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
FOXA2Q9Y261 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
FOXA2Q9Y261 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
FOXA2Q9Y261 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
FOXA2Q9Y261 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
FOXA2Q9Y261 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC16.47■□□□□ 0.23
FOXA2Q9Y261 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
FOXA2Q9Y261 NAA20-201ENST00000310450 920 ntTSL 2 BASIC16.47■□□□□ 0.23
FOXA2Q9Y261 KRT18P11-201ENST00000435214 1283 ntBASIC16.47■□□□□ 0.23
FOXA2Q9Y261 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC16.47■□□□□ 0.23
FOXA2Q9Y261 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
FOXA2Q9Y261 RARRES2P11-201ENST00000635158 484 ntBASIC16.47■□□□□ 0.23
FOXA2Q9Y261 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
FOXA2Q9Y261 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
FOXA2Q9Y261 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
FOXA2Q9Y261 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
FOXA2Q9Y261 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
FOXA2Q9Y261 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
FOXA2Q9Y261 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
FOXA2Q9Y261 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
FOXA2Q9Y261 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
FOXA2Q9Y261 USP39-204ENST00000409766 2033 ntTSL 2 BASIC16.46■□□□□ 0.23
FOXA2Q9Y261 AC092720.2-201ENST00000602388 1665 ntBASIC16.46■□□□□ 0.23
FOXA2Q9Y261 AL121603.2-201ENST00000557373 2117 ntBASIC16.46■□□□□ 0.23
FOXA2Q9Y261 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
FOXA2Q9Y261 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
FOXA2Q9Y261 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
FOXA2Q9Y261 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
FOXA2Q9Y261 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
FOXA2Q9Y261 STX7-201ENST00000367937 1090 ntTSL 5 BASIC16.46■□□□□ 0.23
FOXA2Q9Y261 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
FOXA2Q9Y261 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC16.46■□□□□ 0.23
FOXA2Q9Y261 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
FOXA2Q9Y261 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
FOXA2Q9Y261 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC16.46■□□□□ 0.23
FOXA2Q9Y261 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
FOXA2Q9Y261 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
FOXA2Q9Y261 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
FOXA2Q9Y261 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
FOXA2Q9Y261 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
FOXA2Q9Y261 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
FOXA2Q9Y261 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC16.46■□□□□ 0.23
FOXA2Q9Y261 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC16.46■□□□□ 0.23
FOXA2Q9Y261 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC16.46■□□□□ 0.23
FOXA2Q9Y261 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
FOXA2Q9Y261 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
FOXA2Q9Y261 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC16.45■□□□□ 0.22
FOXA2Q9Y261 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
FOXA2Q9Y261 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
FOXA2Q9Y261 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
FOXA2Q9Y261 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
FOXA2Q9Y261 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
FOXA2Q9Y261 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
FOXA2Q9Y261 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
FOXA2Q9Y261 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
FOXA2Q9Y261 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
FOXA2Q9Y261 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC16.45■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms