Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIME1Q9H400 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIME1Q9H400 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIME1Q9H400 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIME1Q9H400 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC17.92■□□□□ 0.46
LIME1Q9H400 NME6-213ENST00000451657 871 ntTSL 2 BASIC17.92■□□□□ 0.46
LIME1Q9H400 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC17.92■□□□□ 0.46
LIME1Q9H400 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LIME1Q9H400 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LIME1Q9H400 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC17.92■□□□□ 0.46
LIME1Q9H400 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC17.92■□□□□ 0.46
LIME1Q9H400 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
LIME1Q9H400 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIME1Q9H400 RARG-204ENST00000543726 1779 ntTSL 2 BASIC17.91■□□□□ 0.46
LIME1Q9H400 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC17.91■□□□□ 0.46
LIME1Q9H400 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIME1Q9H400 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIME1Q9H400 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIME1Q9H400 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIME1Q9H400 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIME1Q9H400 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIME1Q9H400 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC17.91■□□□□ 0.46
LIME1Q9H400 AC211429.1-201ENST00000415277 523 ntBASIC17.91■□□□□ 0.46
LIME1Q9H400 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC17.91■□□□□ 0.46
LIME1Q9H400 AC243732.1-201ENST00000612648 864 ntBASIC17.91■□□□□ 0.46
LIME1Q9H400 AC073912.3-201ENST00000624414 853 ntBASIC17.91■□□□□ 0.46
LIME1Q9H400 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIME1Q9H400 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC17.91■□□□□ 0.46
LIME1Q9H400 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC17.91■□□□□ 0.46
LIME1Q9H400 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIME1Q9H400 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC17.91■□□□□ 0.46
LIME1Q9H400 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
LIME1Q9H400 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIME1Q9H400 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIME1Q9H400 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIME1Q9H400 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC17.9■□□□□ 0.46
LIME1Q9H400 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
LIME1Q9H400 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC17.9■□□□□ 0.46
LIME1Q9H400 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC17.9■□□□□ 0.46
LIME1Q9H400 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC17.9■□□□□ 0.46
LIME1Q9H400 MIR718-201ENST00000390190 70 ntBASIC17.9■□□□□ 0.46
LIME1Q9H400 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIME1Q9H400 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
LIME1Q9H400 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC17.9■□□□□ 0.46
LIME1Q9H400 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC17.9■□□□□ 0.46
LIME1Q9H400 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
LIME1Q9H400 SNORA78-201ENST00000459373 127 ntBASIC17.9■□□□□ 0.46
LIME1Q9H400 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC17.9■□□□□ 0.46
LIME1Q9H400 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC17.9■□□□□ 0.46
LIME1Q9H400 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC17.9■□□□□ 0.46
LIME1Q9H400 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC17.9■□□□□ 0.46
LIME1Q9H400 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC17.9■□□□□ 0.46
LIME1Q9H400 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC17.9■□□□□ 0.46
LIME1Q9H400 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIME1Q9H400 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC17.9■□□□□ 0.46
LIME1Q9H400 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIME1Q9H400 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC17.89■□□□□ 0.46
LIME1Q9H400 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
LIME1Q9H400 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIME1Q9H400 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIME1Q9H400 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIME1Q9H400 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
LIME1Q9H400 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
LIME1Q9H400 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIME1Q9H400 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIME1Q9H400 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIME1Q9H400 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIME1Q9H400 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC17.89■□□□□ 0.45
LIME1Q9H400 AC233263.1-201ENST00000578059 224 ntBASIC17.89■□□□□ 0.45
LIME1Q9H400 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
LIME1Q9H400 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC17.89■□□□□ 0.45
LIME1Q9H400 AC060766.5-201ENST00000590539 871 ntBASIC17.89■□□□□ 0.45
LIME1Q9H400 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC17.89■□□□□ 0.45
LIME1Q9H400 SPIB-206ENST00000596074 847 ntTSL 2 BASIC17.89■□□□□ 0.45
LIME1Q9H400 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC17.89■□□□□ 0.45
LIME1Q9H400 REXO1L12P-201ENST00000622156 912 ntBASIC17.89■□□□□ 0.45
LIME1Q9H400 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
LIME1Q9H400 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIME1Q9H400 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC17.89■□□□□ 0.45
LIME1Q9H400 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIME1Q9H400 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
LIME1Q9H400 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LIME1Q9H400 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
LIME1Q9H400 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC17.88■□□□□ 0.45
LIME1Q9H400 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
LIME1Q9H400 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC17.88■□□□□ 0.45
LIME1Q9H400 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
LIME1Q9H400 RNF121-214ENST00000533380 870 ntTSL 3 BASIC17.88■□□□□ 0.45
LIME1Q9H400 CYP2T3P-201ENST00000601990 817 ntBASIC17.88■□□□□ 0.45
LIME1Q9H400 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
LIME1Q9H400 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC17.88■□□□□ 0.45
LIME1Q9H400 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
LIME1Q9H400 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
LIME1Q9H400 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
LIME1Q9H400 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
LIME1Q9H400 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC17.87■□□□□ 0.45
LIME1Q9H400 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
LIME1Q9H400 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
LIME1Q9H400 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
LIME1Q9H400 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 79.2 ms