Protein–RNA interactions for Protein: Q9H2S5

RNF39, RING finger protein 39, humanhuman

Predictions only

Length 420 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF39Q9H2S5 MCRIP2P1-201ENST00000394346 511 ntBASIC22.43■■□□□ 1.18
RNF39Q9H2S5 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC22.43■■□□□ 1.18
RNF39Q9H2S5 FAM201B-201ENST00000458407 597 ntBASIC22.43■■□□□ 1.18
RNF39Q9H2S5 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC22.43■■□□□ 1.18
RNF39Q9H2S5 AC093534.1-201ENST00000504977 132 ntBASIC22.43■■□□□ 1.18
RNF39Q9H2S5 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC22.43■■□□□ 1.18
RNF39Q9H2S5 AC003956.1-201ENST00000598450 356 ntTSL 3 BASIC22.43■■□□□ 1.18
RNF39Q9H2S5 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC22.43■■□□□ 1.18
RNF39Q9H2S5 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC22.43■■□□□ 1.18
RNF39Q9H2S5 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC22.43■■□□□ 1.18
RNF39Q9H2S5 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC22.43■■□□□ 1.18
RNF39Q9H2S5 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC22.43■■□□□ 1.18
RNF39Q9H2S5 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
RNF39Q9H2S5 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
RNF39Q9H2S5 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
RNF39Q9H2S5 AC092964.1-201ENST00000623304 1399 ntBASIC22.42■■□□□ 1.18
RNF39Q9H2S5 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
RNF39Q9H2S5 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
RNF39Q9H2S5 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
RNF39Q9H2S5 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC22.42■■□□□ 1.18
RNF39Q9H2S5 POU5F1P3-201ENST00000428824 1078 ntBASIC22.42■■□□□ 1.18
RNF39Q9H2S5 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC22.42■■□□□ 1.18
RNF39Q9H2S5 AC009652.1-201ENST00000528326 648 ntTSL 5 BASIC22.42■■□□□ 1.18
RNF39Q9H2S5 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC22.42■■□□□ 1.18
RNF39Q9H2S5 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
RNF39Q9H2S5 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
RNF39Q9H2S5 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
RNF39Q9H2S5 FBXW4P1-201ENST00000426721 2239 ntBASIC22.42■■□□□ 1.18
RNF39Q9H2S5 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
RNF39Q9H2S5 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
RNF39Q9H2S5 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
RNF39Q9H2S5 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC22.41■■□□□ 1.18
RNF39Q9H2S5 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC22.41■■□□□ 1.18
RNF39Q9H2S5 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC22.41■■□□□ 1.18
RNF39Q9H2S5 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC22.41■■□□□ 1.18
RNF39Q9H2S5 TUB-203ENST00000534099 1759 ntTSL 2 BASIC22.41■■□□□ 1.18
RNF39Q9H2S5 AC116050.2-201ENST00000612102 1779 ntBASIC22.41■■□□□ 1.18
RNF39Q9H2S5 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC22.41■■□□□ 1.18
RNF39Q9H2S5 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
RNF39Q9H2S5 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
RNF39Q9H2S5 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC22.41■■□□□ 1.18
RNF39Q9H2S5 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
RNF39Q9H2S5 AL390039.1-201ENST00000399148 611 ntBASIC22.41■■□□□ 1.18
RNF39Q9H2S5 SERPINH1P1-201ENST00000419794 1249 ntBASIC22.41■■□□□ 1.18
RNF39Q9H2S5 AC013470.3-201ENST00000420252 1194 ntBASIC22.41■■□□□ 1.18
RNF39Q9H2S5 PFN2-202ENST00000423691 911 ntTSL 2 BASIC22.41■■□□□ 1.18
RNF39Q9H2S5 ZRANB2-AS1-201ENST00000426999 607 ntTSL 3 BASIC22.41■■□□□ 1.18
RNF39Q9H2S5 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
RNF39Q9H2S5 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC22.41■■□□□ 1.18
RNF39Q9H2S5 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC22.41■■□□□ 1.18
RNF39Q9H2S5 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC22.41■■□□□ 1.18
RNF39Q9H2S5 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC22.41■■□□□ 1.18
RNF39Q9H2S5 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
RNF39Q9H2S5 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
RNF39Q9H2S5 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC22.41■■□□□ 1.18
RNF39Q9H2S5 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
RNF39Q9H2S5 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
RNF39Q9H2S5 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
RNF39Q9H2S5 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
RNF39Q9H2S5 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
RNF39Q9H2S5 GCK-205ENST00000437084 1385 ntTSL 5 BASIC22.4■■□□□ 1.18
RNF39Q9H2S5 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
RNF39Q9H2S5 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC22.4■■□□□ 1.18
RNF39Q9H2S5 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC22.4■■□□□ 1.18
RNF39Q9H2S5 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC22.4■■□□□ 1.18
RNF39Q9H2S5 LINC02407-202ENST00000553247 1083 ntTSL 3 BASIC22.4■■□□□ 1.18
RNF39Q9H2S5 AC012181.2-201ENST00000570210 699 ntBASIC22.4■■□□□ 1.18
RNF39Q9H2S5 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC22.4■■□□□ 1.18
RNF39Q9H2S5 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
RNF39Q9H2S5 AC108673.3-201ENST00000609183 335 ntBASIC22.4■■□□□ 1.18
RNF39Q9H2S5 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC22.4■■□□□ 1.18
RNF39Q9H2S5 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
RNF39Q9H2S5 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC22.4■■□□□ 1.18
RNF39Q9H2S5 CYP21A1P-202ENST00000354927 1481 ntBASIC22.4■■□□□ 1.18
RNF39Q9H2S5 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC22.4■■□□□ 1.18
RNF39Q9H2S5 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC22.4■■□□□ 1.18
RNF39Q9H2S5 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
RNF39Q9H2S5 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC22.39■■□□□ 1.18
RNF39Q9H2S5 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC22.39■■□□□ 1.18
RNF39Q9H2S5 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
RNF39Q9H2S5 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC22.39■■□□□ 1.17
RNF39Q9H2S5 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
RNF39Q9H2S5 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.17
RNF39Q9H2S5 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC22.39■■□□□ 1.17
RNF39Q9H2S5 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
RNF39Q9H2S5 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC22.39■■□□□ 1.17
RNF39Q9H2S5 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
RNF39Q9H2S5 KRT18P68-201ENST00000392293 1000 ntBASIC22.39■■□□□ 1.17
RNF39Q9H2S5 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC22.39■■□□□ 1.17
RNF39Q9H2S5 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC22.39■■□□□ 1.17
RNF39Q9H2S5 AP000640.1-201ENST00000525337 879 ntTSL 2 BASIC22.39■■□□□ 1.17
RNF39Q9H2S5 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC22.39■■□□□ 1.17
RNF39Q9H2S5 ZNF92P3-201ENST00000596594 954 ntBASIC22.39■■□□□ 1.17
RNF39Q9H2S5 ZNF92P2-201ENST00000600543 1059 ntBASIC22.39■■□□□ 1.17
RNF39Q9H2S5 AL357094.1-201ENST00000603845 844 ntBASIC22.39■■□□□ 1.17
RNF39Q9H2S5 AC090506.2-201ENST00000624521 419 ntBASIC22.39■■□□□ 1.17
RNF39Q9H2S5 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
RNF39Q9H2S5 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC22.39■■□□□ 1.17
RNF39Q9H2S5 STK25-234ENST00000535007 2459 ntTSL 2 BASIC22.39■■□□□ 1.17
RNF39Q9H2S5 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC22.39■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms