Protein–RNA interactions for Protein: Q9BYV6

TRIM55, Tripartite motif-containing protein 55, humanhuman

Predictions only

Length 548 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55Q9BYV6 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC20.54■□□□□ 0.88
TRIM55Q9BYV6 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM55Q9BYV6 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM55Q9BYV6 NARF-205ENST00000412079 1760 ntTSL 5 BASIC20.54■□□□□ 0.88
TRIM55Q9BYV6 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
TRIM55Q9BYV6 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM55Q9BYV6 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC20.54■□□□□ 0.88
TRIM55Q9BYV6 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
TRIM55Q9BYV6 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
TRIM55Q9BYV6 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM55Q9BYV6 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC20.54■□□□□ 0.88
TRIM55Q9BYV6 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM55Q9BYV6 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM55Q9BYV6 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC20.54■□□□□ 0.88
TRIM55Q9BYV6 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TRIM55Q9BYV6 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC20.54■□□□□ 0.88
TRIM55Q9BYV6 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC20.54■□□□□ 0.88
TRIM55Q9BYV6 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC20.54■□□□□ 0.88
TRIM55Q9BYV6 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
TRIM55Q9BYV6 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC20.54■□□□□ 0.88
TRIM55Q9BYV6 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC20.54■□□□□ 0.88
TRIM55Q9BYV6 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC20.54■□□□□ 0.88
TRIM55Q9BYV6 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
TRIM55Q9BYV6 DET1-207ENST00000564406 2315 ntTSL 2 BASIC20.54■□□□□ 0.88
TRIM55Q9BYV6 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC20.54■□□□□ 0.88
TRIM55Q9BYV6 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM55Q9BYV6 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM55Q9BYV6 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
TRIM55Q9BYV6 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM55Q9BYV6 USP39-204ENST00000409766 2033 ntTSL 2 BASIC20.53■□□□□ 0.88
TRIM55Q9BYV6 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC20.53■□□□□ 0.88
TRIM55Q9BYV6 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC20.53■□□□□ 0.88
TRIM55Q9BYV6 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC20.53■□□□□ 0.88
TRIM55Q9BYV6 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC20.53■□□□□ 0.88
TRIM55Q9BYV6 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM55Q9BYV6 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC20.53■□□□□ 0.88
TRIM55Q9BYV6 AC112907.3-201ENST00000577781 2400 ntBASIC20.53■□□□□ 0.88
TRIM55Q9BYV6 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM55Q9BYV6 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM55Q9BYV6 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC20.53■□□□□ 0.88
TRIM55Q9BYV6 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC20.53■□□□□ 0.88
TRIM55Q9BYV6 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TRIM55Q9BYV6 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
TRIM55Q9BYV6 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
TRIM55Q9BYV6 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
TRIM55Q9BYV6 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TRIM55Q9BYV6 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC20.52■□□□□ 0.88
TRIM55Q9BYV6 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC20.52■□□□□ 0.88
TRIM55Q9BYV6 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TRIM55Q9BYV6 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC20.52■□□□□ 0.88
TRIM55Q9BYV6 KRT18P61-201ENST00000585825 1298 ntBASIC20.52■□□□□ 0.88
TRIM55Q9BYV6 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC20.52■□□□□ 0.88
TRIM55Q9BYV6 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TRIM55Q9BYV6 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TRIM55Q9BYV6 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC20.52■□□□□ 0.88
TRIM55Q9BYV6 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC20.52■□□□□ 0.87
TRIM55Q9BYV6 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC20.52■□□□□ 0.87
TRIM55Q9BYV6 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC20.52■□□□□ 0.87
TRIM55Q9BYV6 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
TRIM55Q9BYV6 AL162377.1-201ENST00000618844 1793 ntBASIC20.51■□□□□ 0.87
TRIM55Q9BYV6 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRIM55Q9BYV6 STX5-203ENST00000394690 1568 ntTSL 5 BASIC20.51■□□□□ 0.87
TRIM55Q9BYV6 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRIM55Q9BYV6 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC20.51■□□□□ 0.87
TRIM55Q9BYV6 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRIM55Q9BYV6 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC20.51■□□□□ 0.87
TRIM55Q9BYV6 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRIM55Q9BYV6 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRIM55Q9BYV6 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
TRIM55Q9BYV6 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC20.51■□□□□ 0.87
TRIM55Q9BYV6 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC20.51■□□□□ 0.87
TRIM55Q9BYV6 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC20.51■□□□□ 0.87
TRIM55Q9BYV6 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
TRIM55Q9BYV6 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRIM55Q9BYV6 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC20.51■□□□□ 0.87
TRIM55Q9BYV6 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC20.51■□□□□ 0.87
TRIM55Q9BYV6 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC20.51■□□□□ 0.87
TRIM55Q9BYV6 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRIM55Q9BYV6 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
TRIM55Q9BYV6 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC20.51■□□□□ 0.87
TRIM55Q9BYV6 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC20.51■□□□□ 0.87
TRIM55Q9BYV6 AC087289.5-201ENST00000586076 3175 ntBASIC20.5■□□□□ 0.87
TRIM55Q9BYV6 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TRIM55Q9BYV6 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
TRIM55Q9BYV6 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC20.5■□□□□ 0.87
TRIM55Q9BYV6 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
TRIM55Q9BYV6 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC20.5■□□□□ 0.87
TRIM55Q9BYV6 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
TRIM55Q9BYV6 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TRIM55Q9BYV6 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
TRIM55Q9BYV6 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC20.5■□□□□ 0.87
TRIM55Q9BYV6 DENND3-207ENST00000518347 850 ntTSL 2 BASIC20.5■□□□□ 0.87
TRIM55Q9BYV6 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC20.5■□□□□ 0.87
TRIM55Q9BYV6 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
TRIM55Q9BYV6 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC20.5■□□□□ 0.87
TRIM55Q9BYV6 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
TRIM55Q9BYV6 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC20.5■□□□□ 0.87
TRIM55Q9BYV6 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC20.5■□□□□ 0.87
TRIM55Q9BYV6 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TRIM55Q9BYV6 AL512408.1-201ENST00000569378 2000 ntBASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms