Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC21.32■■□□□ 1
HDAC4P56524 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
HDAC4P56524 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC21.32■■□□□ 1
HDAC4P56524 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC21.32■■□□□ 1
HDAC4P56524 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
HDAC4P56524 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC21.32■■□□□ 1
HDAC4P56524 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC21.32■■□□□ 1
HDAC4P56524 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC21.32■■□□□ 1
HDAC4P56524 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC21.32■■□□□ 1
HDAC4P56524 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC21.32■■□□□ 1
HDAC4P56524 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
HDAC4P56524 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
HDAC4P56524 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
HDAC4P56524 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC21.32■■□□□ 1
HDAC4P56524 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
HDAC4P56524 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
HDAC4P56524 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC21.32■■□□□ 1
HDAC4P56524 AP005212.1-201ENST00000581547 1997 ntBASIC21.32■■□□□ 1
HDAC4P56524 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC21.32■■□□□ 1
HDAC4P56524 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC21.32■■□□□ 1
HDAC4P56524 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
HDAC4P56524 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
HDAC4P56524 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
HDAC4P56524 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC21.31■■□□□ 1
HDAC4P56524 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HDAC4P56524 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HDAC4P56524 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC21.31■■□□□ 1
HDAC4P56524 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC21.31■■□□□ 1
HDAC4P56524 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
HDAC4P56524 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HDAC4P56524 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HDAC4P56524 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC21.31■■□□□ 1
HDAC4P56524 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC21.31■■□□□ 1
HDAC4P56524 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC21.31■■□□□ 1
HDAC4P56524 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC21.31■■□□□ 1
HDAC4P56524 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC21.31■■□□□ 1
HDAC4P56524 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC21.31■■□□□ 1
HDAC4P56524 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC21.31■■□□□ 1
HDAC4P56524 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC21.31■■□□□ 1
HDAC4P56524 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
HDAC4P56524 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC21.31■■□□□ 1
HDAC4P56524 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HDAC4P56524 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
HDAC4P56524 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC21.3■■□□□ 1
HDAC4P56524 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC21.3■■□□□ 1
HDAC4P56524 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC21.3■■□□□ 1
HDAC4P56524 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC21.3■■□□□ 1
HDAC4P56524 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC21.3■■□□□ 1
HDAC4P56524 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
HDAC4P56524 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
HDAC4P56524 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC21.3■■□□□ 1
HDAC4P56524 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC21.3■■□□□ 1
HDAC4P56524 AC005181.1-201ENST00000604782 1256 ntBASIC21.3■■□□□ 1
HDAC4P56524 CYP21A1P-202ENST00000354927 1481 ntBASIC21.3■■□□□ 1
HDAC4P56524 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC21.3■■□□□ 1
HDAC4P56524 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
HDAC4P56524 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC21.3■■□□□ 1
HDAC4P56524 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC21.3■■□□□ 1
HDAC4P56524 LINC01006-201ENST00000333319 2292 ntBASIC21.3■■□□□ 1
HDAC4P56524 AC092667.1-201ENST00000434301 2586 ntBASIC21.3■■□□□ 1
HDAC4P56524 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC21.29■■□□□ 1
HDAC4P56524 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC21.29■■□□□ 1
HDAC4P56524 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC21.29■■□□□ 1
HDAC4P56524 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC21.29■■□□□ 1
HDAC4P56524 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
HDAC4P56524 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC21.29■■□□□ 1
HDAC4P56524 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC21.29■■□□□ 1
HDAC4P56524 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC21.29■■□□□ 1
HDAC4P56524 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC21.29■■□□□ 1
HDAC4P56524 AL050303.2-201ENST00000619798 666 ntBASIC21.29■■□□□ 1
HDAC4P56524 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
HDAC4P56524 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
HDAC4P56524 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC21.29■■□□□ 1
HDAC4P56524 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
HDAC4P56524 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC21.28■■□□□ 1
HDAC4P56524 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC21.28■■□□□ 1
HDAC4P56524 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
HDAC4P56524 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
HDAC4P56524 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC21.28■■□□□ 1
HDAC4P56524 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
HDAC4P56524 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC21.28■■□□□ 1
HDAC4P56524 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC21.28■■□□□ 1
HDAC4P56524 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC21.28■■□□□ 1
HDAC4P56524 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
HDAC4P56524 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC21.28■■□□□ 1
HDAC4P56524 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC21.28■■□□□ 1
HDAC4P56524 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
HDAC4P56524 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
HDAC4P56524 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
HDAC4P56524 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
HDAC4P56524 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC21.28■■□□□ 1
HDAC4P56524 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
HDAC4P56524 BET1L-204ENST00000410108 637 ntTSL 3 BASIC21.28■■□□□ 1
HDAC4P56524 AC026185.1-201ENST00000445748 174 ntBASIC21.28■■□□□ 1
HDAC4P56524 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC21.28■■□□□ 1
HDAC4P56524 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC21.28■■□□□ 1
HDAC4P56524 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC21.28■■□□□ 1
HDAC4P56524 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
HDAC4P56524 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
HDAC4P56524 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms