Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC26.05■■□□□ 1.76
COL5A3P25940 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC26.05■■□□□ 1.76
COL5A3P25940 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC26.05■■□□□ 1.76
COL5A3P25940 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
COL5A3P25940 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC26.05■■□□□ 1.76
COL5A3P25940 MFF-203ENST00000349901 1716 ntTSL 2 BASIC26.05■■□□□ 1.76
COL5A3P25940 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC26.05■■□□□ 1.76
COL5A3P25940 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
COL5A3P25940 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC26.05■■□□□ 1.76
COL5A3P25940 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC26.04■■□□□ 1.76
COL5A3P25940 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
COL5A3P25940 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
COL5A3P25940 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC26.04■■□□□ 1.76
COL5A3P25940 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC26.04■■□□□ 1.76
COL5A3P25940 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
COL5A3P25940 AC026471.5-201ENST00000615068 467 ntBASIC26.04■■□□□ 1.76
COL5A3P25940 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC26.04■■□□□ 1.76
COL5A3P25940 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC26.04■■□□□ 1.76
COL5A3P25940 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
COL5A3P25940 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
COL5A3P25940 AL390719.1-204ENST00000412397 1219 ntBASIC26.03■■□□□ 1.76
COL5A3P25940 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC26.03■■□□□ 1.76
COL5A3P25940 TK2-213ENST00000563369 882 ntTSL 5 BASIC26.03■■□□□ 1.76
COL5A3P25940 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC26.03■■□□□ 1.76
COL5A3P25940 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC26.03■■□□□ 1.76
COL5A3P25940 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
COL5A3P25940 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
COL5A3P25940 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC26.03■■□□□ 1.76
COL5A3P25940 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC26.03■■□□□ 1.76
COL5A3P25940 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC26.02■■□□□ 1.76
COL5A3P25940 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC26.02■■□□□ 1.76
COL5A3P25940 AL121829.2-201ENST00000620908 328 ntBASIC26.02■■□□□ 1.76
COL5A3P25940 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
COL5A3P25940 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
COL5A3P25940 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC26.02■■□□□ 1.76
COL5A3P25940 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC26.02■■□□□ 1.76
COL5A3P25940 CD177P1-201ENST00000606252 935 ntBASIC26.02■■□□□ 1.76
COL5A3P25940 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC26.02■■□□□ 1.76
COL5A3P25940 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
COL5A3P25940 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC26.02■■□□□ 1.76
COL5A3P25940 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC26.01■■□□□ 1.76
COL5A3P25940 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
COL5A3P25940 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
COL5A3P25940 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
COL5A3P25940 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC26.01■■□□□ 1.75
COL5A3P25940 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
COL5A3P25940 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC26.01■■□□□ 1.75
COL5A3P25940 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC26.01■■□□□ 1.75
COL5A3P25940 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
COL5A3P25940 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC26.01■■□□□ 1.75
COL5A3P25940 AP003071.4-201ENST00000562276 1284 ntBASIC26.01■■□□□ 1.75
COL5A3P25940 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC26.01■■□□□ 1.75
COL5A3P25940 C9orf163-202ENST00000624034 2573 ntBASIC26.01■■□□□ 1.75
COL5A3P25940 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
COL5A3P25940 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
COL5A3P25940 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC26■■□□□ 1.75
COL5A3P25940 AL121906.2-201ENST00000621597 723 ntBASIC26■■□□□ 1.75
COL5A3P25940 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC26■■□□□ 1.75
COL5A3P25940 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
COL5A3P25940 AC124283.5-201ENST00000624661 1809 ntBASIC26■■□□□ 1.75
COL5A3P25940 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC26■■□□□ 1.75
COL5A3P25940 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC26■■□□□ 1.75
COL5A3P25940 KRT16P5-201ENST00000455284 522 ntBASIC26■■□□□ 1.75
COL5A3P25940 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC26■■□□□ 1.75
COL5A3P25940 MIR6786-201ENST00000616843 113 ntBASIC26■■□□□ 1.75
COL5A3P25940 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC25.99■■□□□ 1.75
COL5A3P25940 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC25.99■■□□□ 1.75
COL5A3P25940 KRT8P9-201ENST00000558927 1449 ntBASIC25.99■■□□□ 1.75
COL5A3P25940 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC25.99■■□□□ 1.75
COL5A3P25940 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC25.99■■□□□ 1.75
COL5A3P25940 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC25.99■■□□□ 1.75
COL5A3P25940 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC25.99■■□□□ 1.75
COL5A3P25940 AF186192.3-201ENST00000583427 947 ntBASIC25.99■■□□□ 1.75
COL5A3P25940 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
COL5A3P25940 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
COL5A3P25940 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
COL5A3P25940 AL353807.1-201ENST00000427475 662 ntBASIC25.98■■□□□ 1.75
COL5A3P25940 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC25.98■■□□□ 1.75
COL5A3P25940 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC25.98■■□□□ 1.75
COL5A3P25940 CBFB-203ENST00000561924 584 ntTSL 5 BASIC25.98■■□□□ 1.75
COL5A3P25940 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC25.98■■□□□ 1.75
COL5A3P25940 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
COL5A3P25940 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC25.98■■□□□ 1.75
COL5A3P25940 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC25.98■■□□□ 1.75
COL5A3P25940 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
COL5A3P25940 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC25.98■■□□□ 1.75
COL5A3P25940 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC25.98■■□□□ 1.75
COL5A3P25940 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC25.98■■□□□ 1.75
COL5A3P25940 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC25.97■■□□□ 1.75
COL5A3P25940 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC25.97■■□□□ 1.75
COL5A3P25940 P4HB-223ENST00000576390 439 ntTSL 4 BASIC25.97■■□□□ 1.75
COL5A3P25940 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC25.97■■□□□ 1.75
COL5A3P25940 GOLGA2P6-201ENST00000340929 2049 ntBASIC25.97■■□□□ 1.75
COL5A3P25940 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
COL5A3P25940 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
COL5A3P25940 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
COL5A3P25940 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC25.97■■□□□ 1.75
COL5A3P25940 SRI-203ENST00000419179 1307 ntTSL 2 BASIC25.97■■□□□ 1.75
COL5A3P25940 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC25.97■■□□□ 1.75
COL5A3P25940 TMPOP1-202ENST00000424642 1267 ntBASIC25.97■■□□□ 1.75
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms