Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 SERP1-205ENST00000487153 657 ntTSL 4 BASIC20.01■□□□□ 0.79
SDC3O75056 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
SDC3O75056 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC20.01■□□□□ 0.79
SDC3O75056 MIR4497-201ENST00000583208 89 ntBASIC20.01■□□□□ 0.79
SDC3O75056 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC20.01■□□□□ 0.79
SDC3O75056 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SDC3O75056 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC20.01■□□□□ 0.79
SDC3O75056 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SDC3O75056 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SDC3O75056 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SDC3O75056 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC20.01■□□□□ 0.79
SDC3O75056 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
SDC3O75056 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SDC3O75056 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC20■□□□□ 0.79
SDC3O75056 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
SDC3O75056 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC20■□□□□ 0.79
SDC3O75056 EXOC3-AS1-202ENST00000623673 1663 ntBASIC20■□□□□ 0.79
SDC3O75056 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SDC3O75056 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
SDC3O75056 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
SDC3O75056 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SDC3O75056 GGT1-206ENST00000404223 952 ntTSL 2 BASIC20■□□□□ 0.79
SDC3O75056 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC20■□□□□ 0.79
SDC3O75056 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC20■□□□□ 0.79
SDC3O75056 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SDC3O75056 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SDC3O75056 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SDC3O75056 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SDC3O75056 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC20■□□□□ 0.79
SDC3O75056 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20■□□□□ 0.79
SDC3O75056 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SDC3O75056 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
SDC3O75056 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
SDC3O75056 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SDC3O75056 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SDC3O75056 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SDC3O75056 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC19.99■□□□□ 0.79
SDC3O75056 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SDC3O75056 DYM-203ENST00000442713 2147 ntTSL 2 BASIC19.99■□□□□ 0.79
SDC3O75056 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC19.99■□□□□ 0.79
SDC3O75056 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC19.99■□□□□ 0.79
SDC3O75056 ISG20-202ENST00000379224 540 ntTSL 3 BASIC19.99■□□□□ 0.79
SDC3O75056 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC19.99■□□□□ 0.79
SDC3O75056 AL356652.1-201ENST00000615962 565 ntBASIC19.99■□□□□ 0.79
SDC3O75056 AL023875.1-201ENST00000640777 796 ntBASIC19.99■□□□□ 0.79
SDC3O75056 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
SDC3O75056 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SDC3O75056 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SDC3O75056 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SDC3O75056 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
SDC3O75056 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
SDC3O75056 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
SDC3O75056 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
SDC3O75056 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SDC3O75056 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
SDC3O75056 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SDC3O75056 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SDC3O75056 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SDC3O75056 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
SDC3O75056 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
SDC3O75056 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC19.98■□□□□ 0.79
SDC3O75056 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC19.98■□□□□ 0.79
SDC3O75056 PGM5P4-201ENST00000421970 445 ntBASIC19.98■□□□□ 0.79
SDC3O75056 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
SDC3O75056 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC19.98■□□□□ 0.79
SDC3O75056 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC19.98■□□□□ 0.79
SDC3O75056 TK2-204ENST00000525974 1178 ntTSL 2 BASIC19.98■□□□□ 0.79
SDC3O75056 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
SDC3O75056 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC19.98■□□□□ 0.79
SDC3O75056 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
SDC3O75056 BRWD1-AS2-201ENST00000603064 1028 ntBASIC19.98■□□□□ 0.79
SDC3O75056 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
SDC3O75056 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC19.98■□□□□ 0.79
SDC3O75056 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC19.98■□□□□ 0.79
SDC3O75056 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
SDC3O75056 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC19.98■□□□□ 0.79
SDC3O75056 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
SDC3O75056 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
SDC3O75056 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SDC3O75056 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SDC3O75056 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
SDC3O75056 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC19.97■□□□□ 0.79
SDC3O75056 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
SDC3O75056 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SDC3O75056 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SDC3O75056 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SDC3O75056 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC19.97■□□□□ 0.79
SDC3O75056 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SDC3O75056 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC19.97■□□□□ 0.79
SDC3O75056 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC19.97■□□□□ 0.79
SDC3O75056 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
SDC3O75056 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SDC3O75056 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SDC3O75056 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
SDC3O75056 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SDC3O75056 LY6E-205ENST00000519611 635 ntTSL 3 BASIC19.96■□□□□ 0.79
SDC3O75056 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC19.96■□□□□ 0.79
SDC3O75056 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC19.96■□□□□ 0.79
SDC3O75056 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SDC3O75056 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC19.96■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms