Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
TCRBV7S3A2A0A539 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
TCRBV7S3A2A0A539 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
TCRBV7S3A2A0A539 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC20.77■□□□□ 0.92
TCRBV7S3A2A0A539 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
TCRBV7S3A2A0A539 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
TCRBV7S3A2A0A539 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC20.77■□□□□ 0.92
TCRBV7S3A2A0A539 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC20.77■□□□□ 0.92
TCRBV7S3A2A0A539 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC20.77■□□□□ 0.92
TCRBV7S3A2A0A539 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC20.77■□□□□ 0.92
TCRBV7S3A2A0A539 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC20.77■□□□□ 0.92
TCRBV7S3A2A0A539 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC20.77■□□□□ 0.92
TCRBV7S3A2A0A539 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
TCRBV7S3A2A0A539 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
TCRBV7S3A2A0A539 AC019069.1-201ENST00000610008 1333 ntBASIC20.77■□□□□ 0.91
TCRBV7S3A2A0A539 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
TCRBV7S3A2A0A539 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
TCRBV7S3A2A0A539 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
TCRBV7S3A2A0A539 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TCRBV7S3A2A0A539 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
TCRBV7S3A2A0A539 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC20.76■□□□□ 0.91
TCRBV7S3A2A0A539 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
TCRBV7S3A2A0A539 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC20.76■□□□□ 0.91
TCRBV7S3A2A0A539 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC20.76■□□□□ 0.91
TCRBV7S3A2A0A539 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TCRBV7S3A2A0A539 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
TCRBV7S3A2A0A539 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC20.76■□□□□ 0.91
TCRBV7S3A2A0A539 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TCRBV7S3A2A0A539 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC20.76■□□□□ 0.91
TCRBV7S3A2A0A539 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC20.76■□□□□ 0.91
TCRBV7S3A2A0A539 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
TCRBV7S3A2A0A539 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
TCRBV7S3A2A0A539 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TCRBV7S3A2A0A539 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
TCRBV7S3A2A0A539 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TCRBV7S3A2A0A539 AC243732.1-201ENST00000612648 864 ntBASIC20.75■□□□□ 0.91
TCRBV7S3A2A0A539 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC20.75■□□□□ 0.91
TCRBV7S3A2A0A539 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC20.74■□□□□ 0.91
TCRBV7S3A2A0A539 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TCRBV7S3A2A0A539 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
TCRBV7S3A2A0A539 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TCRBV7S3A2A0A539 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
TCRBV7S3A2A0A539 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TCRBV7S3A2A0A539 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
TCRBV7S3A2A0A539 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
TCRBV7S3A2A0A539 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TCRBV7S3A2A0A539 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
TCRBV7S3A2A0A539 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC20.74■□□□□ 0.91
TCRBV7S3A2A0A539 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
TCRBV7S3A2A0A539 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC20.74■□□□□ 0.91
TCRBV7S3A2A0A539 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
TCRBV7S3A2A0A539 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
TCRBV7S3A2A0A539 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC20.74■□□□□ 0.91
TCRBV7S3A2A0A539 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
TCRBV7S3A2A0A539 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TCRBV7S3A2A0A539 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.74■□□□□ 0.91
TCRBV7S3A2A0A539 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
TCRBV7S3A2A0A539 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC20.74■□□□□ 0.91
TCRBV7S3A2A0A539 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TCRBV7S3A2A0A539 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
TCRBV7S3A2A0A539 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TCRBV7S3A2A0A539 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TCRBV7S3A2A0A539 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC20.73■□□□□ 0.91
TCRBV7S3A2A0A539 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
TCRBV7S3A2A0A539 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TCRBV7S3A2A0A539 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TCRBV7S3A2A0A539 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC20.73■□□□□ 0.91
TCRBV7S3A2A0A539 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC20.73■□□□□ 0.91
TCRBV7S3A2A0A539 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC20.73■□□□□ 0.91
TCRBV7S3A2A0A539 SLC7A5P1-201ENST00000568957 537 ntBASIC20.73■□□□□ 0.91
TCRBV7S3A2A0A539 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
TCRBV7S3A2A0A539 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TCRBV7S3A2A0A539 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
TCRBV7S3A2A0A539 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
TCRBV7S3A2A0A539 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC20.73■□□□□ 0.91
TCRBV7S3A2A0A539 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
TCRBV7S3A2A0A539 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
TCRBV7S3A2A0A539 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC20.72■□□□□ 0.91
TCRBV7S3A2A0A539 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TCRBV7S3A2A0A539 AC007952.6-201ENST00000573168 2673 ntBASIC20.72■□□□□ 0.91
TCRBV7S3A2A0A539 AC003957.1-201ENST00000625108 2673 ntBASIC20.72■□□□□ 0.91
TCRBV7S3A2A0A539 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC20.72■□□□□ 0.91
TCRBV7S3A2A0A539 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
TCRBV7S3A2A0A539 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TCRBV7S3A2A0A539 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
TCRBV7S3A2A0A539 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TCRBV7S3A2A0A539 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
TCRBV7S3A2A0A539 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TCRBV7S3A2A0A539 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TCRBV7S3A2A0A539 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
TCRBV7S3A2A0A539 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC20.72■□□□□ 0.91
TCRBV7S3A2A0A539 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC20.72■□□□□ 0.91
TCRBV7S3A2A0A539 UBE2DNL-204ENST00000602536 740 ntBASIC20.72■□□□□ 0.91
TCRBV7S3A2A0A539 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC20.72■□□□□ 0.91
TCRBV7S3A2A0A539 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC20.72■□□□□ 0.91
TCRBV7S3A2A0A539 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC20.72■□□□□ 0.91
TCRBV7S3A2A0A539 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
TCRBV7S3A2A0A539 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TCRBV7S3A2A0A539 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
TCRBV7S3A2A0A539 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC20.72■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms