Protein–RNA interactions for Protein: Q9R1N9

Col13a1, Collagen alpha-1(XIII) chain, mousemouse

Predictions only

Length 751 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col13a1Q9R1N9 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Col13a1Q9R1N9 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC20.63■□□□□ 0.89
Col13a1Q9R1N9 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Col13a1Q9R1N9 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Col13a1Q9R1N9 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC20.62■□□□□ 0.89
Col13a1Q9R1N9 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC20.62■□□□□ 0.89
Col13a1Q9R1N9 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Col13a1Q9R1N9 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Col13a1Q9R1N9 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC20.59■□□□□ 0.89
Col13a1Q9R1N9 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Col13a1Q9R1N9 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC20.59■□□□□ 0.89
Col13a1Q9R1N9 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Col13a1Q9R1N9 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
Col13a1Q9R1N9 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
Col13a1Q9R1N9 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC20.58■□□□□ 0.88
Col13a1Q9R1N9 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col13a1Q9R1N9 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
Col13a1Q9R1N9 Gm6311-201ENSMUST00000073790 878 ntBASIC20.57■□□□□ 0.88
Col13a1Q9R1N9 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Col13a1Q9R1N9 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Col13a1Q9R1N9 AC153504.1-201ENSMUST00000218379 2290 ntBASIC20.56■□□□□ 0.88
Col13a1Q9R1N9 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Col13a1Q9R1N9 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Col13a1Q9R1N9 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Col13a1Q9R1N9 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Col13a1Q9R1N9 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Col13a1Q9R1N9 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
Col13a1Q9R1N9 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Col13a1Q9R1N9 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC20.52■□□□□ 0.88
Col13a1Q9R1N9 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Col13a1Q9R1N9 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Col13a1Q9R1N9 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Col13a1Q9R1N9 Otulin-201ENSMUST00000059662 1491 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col13a1Q9R1N9 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col13a1Q9R1N9 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC20.51■□□□□ 0.87
Col13a1Q9R1N9 Hs3st6-201ENSMUST00000044922 1219 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col13a1Q9R1N9 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Col13a1Q9R1N9 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col13a1Q9R1N9 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Col13a1Q9R1N9 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Col13a1Q9R1N9 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Col13a1Q9R1N9 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
Col13a1Q9R1N9 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Col13a1Q9R1N9 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Col13a1Q9R1N9 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Col13a1Q9R1N9 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Col13a1Q9R1N9 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Col13a1Q9R1N9 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
Col13a1Q9R1N9 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
Col13a1Q9R1N9 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Col13a1Q9R1N9 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Col13a1Q9R1N9 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Col13a1Q9R1N9 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
Col13a1Q9R1N9 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Col13a1Q9R1N9 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC20.47■□□□□ 0.87
Col13a1Q9R1N9 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC20.47■□□□□ 0.87
Col13a1Q9R1N9 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Col13a1Q9R1N9 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC20.46■□□□□ 0.87
Col13a1Q9R1N9 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
Col13a1Q9R1N9 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Col13a1Q9R1N9 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
Col13a1Q9R1N9 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
Col13a1Q9R1N9 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
Col13a1Q9R1N9 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
Col13a1Q9R1N9 Gm15039-201ENSMUST00000118914 875 ntBASIC20.45■□□□□ 0.86
Col13a1Q9R1N9 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Col13a1Q9R1N9 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Col13a1Q9R1N9 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC20.42■□□□□ 0.86
Col13a1Q9R1N9 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC20.42■□□□□ 0.86
Col13a1Q9R1N9 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC20.42■□□□□ 0.86
Col13a1Q9R1N9 AC167019.3-201ENSMUST00000228225 1266 ntBASIC20.42■□□□□ 0.86
Col13a1Q9R1N9 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC20.42■□□□□ 0.86
Col13a1Q9R1N9 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Col13a1Q9R1N9 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC20.41■□□□□ 0.86
Col13a1Q9R1N9 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC20.41■□□□□ 0.86
Col13a1Q9R1N9 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Col13a1Q9R1N9 Unc119-203ENSMUST00000108295 1371 ntTSL 3 BASIC20.4■□□□□ 0.86
Col13a1Q9R1N9 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.86
Col13a1Q9R1N9 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC20.39■□□□□ 0.85
Col13a1Q9R1N9 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC20.39■□□□□ 0.85
Col13a1Q9R1N9 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
Col13a1Q9R1N9 AC131739.1-201ENSMUST00000221692 1245 ntBASIC20.38■□□□□ 0.85
Col13a1Q9R1N9 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Col13a1Q9R1N9 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC20.37■□□□□ 0.85
Col13a1Q9R1N9 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Col13a1Q9R1N9 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Col13a1Q9R1N9 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC20.37■□□□□ 0.85
Col13a1Q9R1N9 Gm8098-201ENSMUST00000146985 1499 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Col13a1Q9R1N9 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Col13a1Q9R1N9 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Col13a1Q9R1N9 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC20.35■□□□□ 0.85
Col13a1Q9R1N9 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Col13a1Q9R1N9 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Col13a1Q9R1N9 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Col13a1Q9R1N9 Eva1b-202ENSMUST00000106150 1144 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Col13a1Q9R1N9 Gm45051-201ENSMUST00000206838 963 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Col13a1Q9R1N9 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Col13a1Q9R1N9 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Col13a1Q9R1N9 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC20.33■□□□□ 0.85
Col13a1Q9R1N9 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Retrieved 100 of 76,532 protein–RNA pairs in 12.8 ms