Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC29.23■■■□□ 2.27
Trim56Q80VI1 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC29.23■■■□□ 2.27
Trim56Q80VI1 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC29.22■■■□□ 2.27
Trim56Q80VI1 Gm9905-201ENSMUST00000065740 1845 ntBASIC29.22■■■□□ 2.27
Trim56Q80VI1 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
Trim56Q80VI1 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC29.21■■■□□ 2.27
Trim56Q80VI1 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC29.21■■■□□ 2.27
Trim56Q80VI1 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC29.21■■■□□ 2.27
Trim56Q80VI1 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC29.21■■■□□ 2.27
Trim56Q80VI1 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
Trim56Q80VI1 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC29.18■■■□□ 2.26
Trim56Q80VI1 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
Trim56Q80VI1 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC29.18■■■□□ 2.26
Trim56Q80VI1 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
Trim56Q80VI1 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC29.17■■■□□ 2.26
Trim56Q80VI1 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
Trim56Q80VI1 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
Trim56Q80VI1 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
Trim56Q80VI1 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
Trim56Q80VI1 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC29.15■■■□□ 2.26
Trim56Q80VI1 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC29.15■■■□□ 2.26
Trim56Q80VI1 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC29.15■■■□□ 2.26
Trim56Q80VI1 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.26
Trim56Q80VI1 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC29.13■■■□□ 2.25
Trim56Q80VI1 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC29.12■■■□□ 2.25
Trim56Q80VI1 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC29.12■■■□□ 2.25
Trim56Q80VI1 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC29.12■■■□□ 2.25
Trim56Q80VI1 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC29.11■■■□□ 2.25
Trim56Q80VI1 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
Trim56Q80VI1 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
Trim56Q80VI1 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC29.1■■■□□ 2.25
Trim56Q80VI1 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC29.09■■■□□ 2.25
Trim56Q80VI1 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC29.08■■■□□ 2.25
Trim56Q80VI1 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC29.08■■■□□ 2.25
Trim56Q80VI1 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC29.08■■■□□ 2.25
Trim56Q80VI1 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC29.07■■■□□ 2.24
Trim56Q80VI1 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
Trim56Q80VI1 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC29.05■■■□□ 2.24
Trim56Q80VI1 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC29.04■■■□□ 2.24
Trim56Q80VI1 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC29.04■■■□□ 2.24
Trim56Q80VI1 Amer2-203ENSMUST00000225247 2662 ntBASIC29.04■■■□□ 2.24
Trim56Q80VI1 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC29.04■■■□□ 2.24
Trim56Q80VI1 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC29.03■■■□□ 2.24
Trim56Q80VI1 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC29.03■■■□□ 2.24
Trim56Q80VI1 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC29.03■■■□□ 2.24
Trim56Q80VI1 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC29.01■■■□□ 2.23
Trim56Q80VI1 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC29.01■■■□□ 2.23
Trim56Q80VI1 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC29.01■■■□□ 2.23
Trim56Q80VI1 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC29■■■□□ 2.23
Trim56Q80VI1 Gm9939-201ENSMUST00000067161 1154 ntBASIC28.99■■■□□ 2.23
Trim56Q80VI1 E030037K01Rik-201ENSMUST00000180928 1756 ntBASIC28.98■■■□□ 2.23
Trim56Q80VI1 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC28.97■■■□□ 2.23
Trim56Q80VI1 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC28.97■■■□□ 2.23
Trim56Q80VI1 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC28.97■■■□□ 2.23
Trim56Q80VI1 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC28.96■■■□□ 2.23
Trim56Q80VI1 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC28.96■■■□□ 2.23
Trim56Q80VI1 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC28.96■■■□□ 2.23
Trim56Q80VI1 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC28.95■■■□□ 2.22
Trim56Q80VI1 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC28.94■■■□□ 2.22
Trim56Q80VI1 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC28.94■■■□□ 2.22
Trim56Q80VI1 Gm42809-201ENSMUST00000198429 1138 ntBASIC28.94■■■□□ 2.22
Trim56Q80VI1 Pcf11-205ENSMUST00000208255 1720 ntBASIC28.93■■■□□ 2.22
Trim56Q80VI1 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC28.93■■■□□ 2.22
Trim56Q80VI1 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC28.93■■■□□ 2.22
Trim56Q80VI1 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC28.91■■■□□ 2.22
Trim56Q80VI1 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC28.91■■■□□ 2.22
Trim56Q80VI1 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC28.91■■■□□ 2.22
Trim56Q80VI1 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC28.9■■■□□ 2.22
Trim56Q80VI1 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC28.9■■■□□ 2.22
Trim56Q80VI1 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC28.9■■■□□ 2.22
Trim56Q80VI1 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC28.89■■■□□ 2.22
Trim56Q80VI1 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC28.88■■■□□ 2.21
Trim56Q80VI1 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC28.88■■■□□ 2.21
Trim56Q80VI1 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC28.87■■■□□ 2.21
Trim56Q80VI1 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC28.87■■■□□ 2.21
Trim56Q80VI1 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC28.86■■■□□ 2.21
Trim56Q80VI1 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC28.84■■■□□ 2.21
Trim56Q80VI1 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC28.84■■■□□ 2.21
Trim56Q80VI1 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
Trim56Q80VI1 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC28.84■■■□□ 2.21
Trim56Q80VI1 Gm6821-201ENSMUST00000107540 542 ntBASIC28.82■■■□□ 2.2
Trim56Q80VI1 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC28.82■■■□□ 2.2
Trim56Q80VI1 Nkain2-201ENSMUST00000092602 558 ntBASIC28.82■■■□□ 2.2
Trim56Q80VI1 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC28.82■■■□□ 2.2
Trim56Q80VI1 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC28.81■■■□□ 2.2
Trim56Q80VI1 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC28.8■■■□□ 2.2
Trim56Q80VI1 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC28.8■■■□□ 2.2
Trim56Q80VI1 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC28.8■■■□□ 2.2
Trim56Q80VI1 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC28.8■■■□□ 2.2
Trim56Q80VI1 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC28.8■■■□□ 2.2
Trim56Q80VI1 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC28.79■■■□□ 2.2
Trim56Q80VI1 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
Trim56Q80VI1 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC28.78■■■□□ 2.2
Trim56Q80VI1 Gm8503-201ENSMUST00000118131 455 ntBASIC28.77■■■□□ 2.2
Trim56Q80VI1 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC28.77■■■□□ 2.2
Trim56Q80VI1 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
Trim56Q80VI1 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC28.76■■■□□ 2.19
Trim56Q80VI1 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
Trim56Q80VI1 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC28.72■■■□□ 2.19
Trim56Q80VI1 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
Retrieved 100 of 76,532 protein–RNA pairs in 18.1 ms