Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC32.65■■■□□ 2.82
Trim28Q62318 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC32.63■■■□□ 2.81
Trim28Q62318 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC32.62■■■□□ 2.81
Trim28Q62318 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC32.62■■■□□ 2.81
Trim28Q62318 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC32.61■■■□□ 2.81
Trim28Q62318 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC32.6■■■□□ 2.81
Trim28Q62318 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC32.6■■■□□ 2.81
Trim28Q62318 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC32.58■■■□□ 2.81
Trim28Q62318 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC32.58■■■□□ 2.81
Trim28Q62318 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC32.58■■■□□ 2.81
Trim28Q62318 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC32.57■■■□□ 2.81
Trim28Q62318 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC32.57■■■□□ 2.8
Trim28Q62318 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC32.56■■■□□ 2.8
Trim28Q62318 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC32.56■■■□□ 2.8
Trim28Q62318 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC32.55■■■□□ 2.8
Trim28Q62318 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC32.55■■■□□ 2.8
Trim28Q62318 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC32.55■■■□□ 2.8
Trim28Q62318 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC32.54■■■□□ 2.8
Trim28Q62318 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC32.54■■■□□ 2.8
Trim28Q62318 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC32.53■■■□□ 2.8
Trim28Q62318 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC32.53■■■□□ 2.8
Trim28Q62318 AC153504.1-201ENSMUST00000218379 2290 ntBASIC32.53■■■□□ 2.8
Trim28Q62318 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC32.53■■■□□ 2.8
Trim28Q62318 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC32.52■■■□□ 2.8
Trim28Q62318 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC32.52■■■□□ 2.8
Trim28Q62318 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC32.52■■■□□ 2.8
Trim28Q62318 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC32.52■■■□□ 2.8
Trim28Q62318 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC32.52■■■□□ 2.8
Trim28Q62318 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC32.51■■■□□ 2.79
Trim28Q62318 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC32.51■■■□□ 2.79
Trim28Q62318 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC32.5■■■□□ 2.79
Trim28Q62318 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC32.5■■■□□ 2.79
Trim28Q62318 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC32.5■■■□□ 2.79
Trim28Q62318 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC32.49■■■□□ 2.79
Trim28Q62318 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC32.47■■■□□ 2.79
Trim28Q62318 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC32.47■■■□□ 2.79
Trim28Q62318 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC32.46■■■□□ 2.79
Trim28Q62318 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC32.46■■■□□ 2.79
Trim28Q62318 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC32.45■■■□□ 2.79
Trim28Q62318 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC32.45■■■□□ 2.78
Trim28Q62318 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC32.45■■■□□ 2.78
Trim28Q62318 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC32.44■■■□□ 2.78
Trim28Q62318 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC32.43■■■□□ 2.78
Trim28Q62318 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC32.42■■■□□ 2.78
Trim28Q62318 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC32.4■■■□□ 2.78
Trim28Q62318 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC32.4■■■□□ 2.78
Trim28Q62318 Zxda-201ENSMUST00000117281 2621 ntBASIC32.39■■■□□ 2.78
Trim28Q62318 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC32.39■■■□□ 2.78
Trim28Q62318 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC32.38■■■□□ 2.77
Trim28Q62318 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC32.36■■■□□ 2.77
Trim28Q62318 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC32.36■■■□□ 2.77
Trim28Q62318 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC32.36■■■□□ 2.77
Trim28Q62318 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC32.35■■■□□ 2.77
Trim28Q62318 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC32.35■■■□□ 2.77
Trim28Q62318 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC32.34■■■□□ 2.77
Trim28Q62318 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC32.34■■■□□ 2.77
Trim28Q62318 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC32.34■■■□□ 2.77
Trim28Q62318 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC32.34■■■□□ 2.77
Trim28Q62318 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC32.32■■■□□ 2.76
Trim28Q62318 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC32.31■■■□□ 2.76
Trim28Q62318 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC32.31■■■□□ 2.76
Trim28Q62318 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC32.3■■■□□ 2.76
Trim28Q62318 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC32.3■■■□□ 2.76
Trim28Q62318 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC32.3■■■□□ 2.76
Trim28Q62318 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC32.29■■■□□ 2.76
Trim28Q62318 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC32.29■■■□□ 2.76
Trim28Q62318 Gm5987-201ENSMUST00000196433 1151 ntBASIC32.29■■■□□ 2.76
Trim28Q62318 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC32.29■■■□□ 2.76
Trim28Q62318 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC32.28■■■□□ 2.76
Trim28Q62318 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC32.27■■■□□ 2.76
Trim28Q62318 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC32.27■■■□□ 2.76
Trim28Q62318 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC32.26■■■□□ 2.76
Trim28Q62318 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC32.26■■■□□ 2.75
Trim28Q62318 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC32.26■■■□□ 2.75
Trim28Q62318 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC32.25■■■□□ 2.75
Trim28Q62318 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC32.24■■■□□ 2.75
Trim28Q62318 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC32.23■■■□□ 2.75
Trim28Q62318 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC32.23■■■□□ 2.75
Trim28Q62318 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC32.22■■■□□ 2.75
Trim28Q62318 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC32.22■■■□□ 2.75
Trim28Q62318 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC32.22■■■□□ 2.75
Trim28Q62318 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC32.21■■■□□ 2.75
Trim28Q62318 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC32.21■■■□□ 2.75
Trim28Q62318 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC32.2■■■□□ 2.75
Trim28Q62318 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC32.2■■■□□ 2.75
Trim28Q62318 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC32.2■■■□□ 2.75
Trim28Q62318 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC32.2■■■□□ 2.74
Trim28Q62318 Gm30023-201ENSMUST00000197970 889 ntBASIC32.19■■■□□ 2.74
Trim28Q62318 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC32.17■■■□□ 2.74
Trim28Q62318 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC32.17■■■□□ 2.74
Trim28Q62318 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC32.17■■■□□ 2.74
Trim28Q62318 Pcf11-205ENSMUST00000208255 1720 ntBASIC32.17■■■□□ 2.74
Trim28Q62318 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC32.17■■■□□ 2.74
Trim28Q62318 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC32.16■■■□□ 2.74
Trim28Q62318 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC32.16■■■□□ 2.74
Trim28Q62318 Gm43445-201ENSMUST00000198564 2091 ntBASIC32.14■■■□□ 2.74
Trim28Q62318 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC32.14■■■□□ 2.74
Trim28Q62318 Gm7432-201ENSMUST00000210343 879 ntBASIC32.14■■■□□ 2.74
Trim28Q62318 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC32.14■■■□□ 2.74
Trim28Q62318 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC32.12■■■□□ 2.73
Retrieved 100 of 76,532 protein–RNA pairs in 16.3 ms