Protein–RNA interactions for Protein: Q4VGL6

Rc3h1, Roquin-1, mousemouse

Known RBP Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rc3h1Q4VGL6 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC28.65■■■□□ 2.18
Rc3h1Q4VGL6 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC28.65■■■□□ 2.18
Rc3h1Q4VGL6 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
Rc3h1Q4VGL6 Nkain2-201ENSMUST00000092602 558 ntBASIC28.64■■■□□ 2.18
Rc3h1Q4VGL6 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
Rc3h1Q4VGL6 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
Rc3h1Q4VGL6 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
Rc3h1Q4VGL6 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC28.63■■■□□ 2.17
Rc3h1Q4VGL6 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC28.63■■■□□ 2.17
Rc3h1Q4VGL6 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC28.63■■■□□ 2.17
Rc3h1Q4VGL6 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC28.6■■■□□ 2.17
Rc3h1Q4VGL6 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC28.59■■■□□ 2.17
Rc3h1Q4VGL6 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
Rc3h1Q4VGL6 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC28.59■■■□□ 2.17
Rc3h1Q4VGL6 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC28.57■■■□□ 2.16
Rc3h1Q4VGL6 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC28.57■■■□□ 2.16
Rc3h1Q4VGL6 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC28.55■■■□□ 2.16
Rc3h1Q4VGL6 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
Rc3h1Q4VGL6 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC28.54■■■□□ 2.16
Rc3h1Q4VGL6 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC28.54■■■□□ 2.16
Rc3h1Q4VGL6 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
Rc3h1Q4VGL6 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC28.52■■■□□ 2.16
Rc3h1Q4VGL6 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC28.52■■■□□ 2.16
Rc3h1Q4VGL6 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC28.51■■■□□ 2.15
Rc3h1Q4VGL6 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC28.51■■■□□ 2.15
Rc3h1Q4VGL6 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC28.5■■■□□ 2.15
Rc3h1Q4VGL6 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC28.5■■■□□ 2.15
Rc3h1Q4VGL6 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC28.5■■■□□ 2.15
Rc3h1Q4VGL6 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
Rc3h1Q4VGL6 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
Rc3h1Q4VGL6 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC28.49■■■□□ 2.15
Rc3h1Q4VGL6 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC28.48■■■□□ 2.15
Rc3h1Q4VGL6 Zxda-201ENSMUST00000117281 2621 ntBASIC28.47■■■□□ 2.15
Rc3h1Q4VGL6 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC28.47■■■□□ 2.15
Rc3h1Q4VGL6 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
Rc3h1Q4VGL6 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC28.46■■■□□ 2.15
Rc3h1Q4VGL6 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.15
Rc3h1Q4VGL6 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC28.45■■■□□ 2.14
Rc3h1Q4VGL6 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC28.45■■■□□ 2.14
Rc3h1Q4VGL6 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC28.45■■■□□ 2.14
Rc3h1Q4VGL6 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.14
Rc3h1Q4VGL6 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC28.44■■■□□ 2.14
Rc3h1Q4VGL6 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC28.44■■■□□ 2.14
Rc3h1Q4VGL6 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC28.43■■■□□ 2.14
Rc3h1Q4VGL6 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC28.43■■■□□ 2.14
Rc3h1Q4VGL6 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
Rc3h1Q4VGL6 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
Rc3h1Q4VGL6 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC28.42■■■□□ 2.14
Rc3h1Q4VGL6 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
Rc3h1Q4VGL6 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC28.42■■■□□ 2.14
Rc3h1Q4VGL6 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
Rc3h1Q4VGL6 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC28.41■■■□□ 2.14
Rc3h1Q4VGL6 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC28.41■■■□□ 2.14
Rc3h1Q4VGL6 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC28.4■■■□□ 2.14
Rc3h1Q4VGL6 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC28.4■■■□□ 2.14
Rc3h1Q4VGL6 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC28.39■■■□□ 2.14
Rc3h1Q4VGL6 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.13
Rc3h1Q4VGL6 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC28.38■■■□□ 2.13
Rc3h1Q4VGL6 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC28.38■■■□□ 2.13
Rc3h1Q4VGL6 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC28.37■■■□□ 2.13
Rc3h1Q4VGL6 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC28.37■■■□□ 2.13
Rc3h1Q4VGL6 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
Rc3h1Q4VGL6 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
Rc3h1Q4VGL6 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
Rc3h1Q4VGL6 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
Rc3h1Q4VGL6 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC28.34■■■□□ 2.13
Rc3h1Q4VGL6 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
Rc3h1Q4VGL6 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
Rc3h1Q4VGL6 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC28.33■■■□□ 2.13
Rc3h1Q4VGL6 Gm5987-201ENSMUST00000196433 1151 ntBASIC28.33■■■□□ 2.13
Rc3h1Q4VGL6 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
Rc3h1Q4VGL6 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
Rc3h1Q4VGL6 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
Rc3h1Q4VGL6 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC28.32■■■□□ 2.12
Rc3h1Q4VGL6 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC28.31■■■□□ 2.12
Rc3h1Q4VGL6 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC28.31■■■□□ 2.12
Rc3h1Q4VGL6 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
Rc3h1Q4VGL6 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
Rc3h1Q4VGL6 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC28.28■■■□□ 2.12
Rc3h1Q4VGL6 Gm43445-201ENSMUST00000198564 2091 ntBASIC28.28■■■□□ 2.12
Rc3h1Q4VGL6 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
Rc3h1Q4VGL6 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC28.26■■■□□ 2.11
Rc3h1Q4VGL6 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC28.26■■■□□ 2.11
Rc3h1Q4VGL6 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC28.26■■■□□ 2.11
Rc3h1Q4VGL6 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
Rc3h1Q4VGL6 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
Rc3h1Q4VGL6 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC28.23■■■□□ 2.11
Rc3h1Q4VGL6 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC28.23■■■□□ 2.11
Rc3h1Q4VGL6 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC28.22■■■□□ 2.11
Rc3h1Q4VGL6 Gm30023-201ENSMUST00000197970 889 ntBASIC28.2■■■□□ 2.1
Rc3h1Q4VGL6 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
Rc3h1Q4VGL6 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
Rc3h1Q4VGL6 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
Rc3h1Q4VGL6 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
Rc3h1Q4VGL6 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC28.18■■■□□ 2.1
Rc3h1Q4VGL6 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
Rc3h1Q4VGL6 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC28.18■■■□□ 2.1
Rc3h1Q4VGL6 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC28.18■■■□□ 2.1
Rc3h1Q4VGL6 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
Rc3h1Q4VGL6 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
Retrieved 100 of 76,532 protein–RNA pairs in 18.5 ms