Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 AC153504.1-201ENSMUST00000218379 2290 ntBASIC24.31■■□□□ 1.48
Chd3B1AR17 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC24.3■■□□□ 1.48
Chd3B1AR17 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
Chd3B1AR17 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC24.29■■□□□ 1.48
Chd3B1AR17 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC24.27■■□□□ 1.48
Chd3B1AR17 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
Chd3B1AR17 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC24.26■■□□□ 1.47
Chd3B1AR17 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC24.26■■□□□ 1.47
Chd3B1AR17 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
Chd3B1AR17 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
Chd3B1AR17 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC24.25■■□□□ 1.47
Chd3B1AR17 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC24.25■■□□□ 1.47
Chd3B1AR17 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
Chd3B1AR17 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
Chd3B1AR17 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
Chd3B1AR17 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
Chd3B1AR17 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
Chd3B1AR17 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
Chd3B1AR17 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
Chd3B1AR17 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC24.23■■□□□ 1.47
Chd3B1AR17 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
Chd3B1AR17 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC24.2■■□□□ 1.47
Chd3B1AR17 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC24.2■■□□□ 1.46
Chd3B1AR17 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
Chd3B1AR17 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC24.19■■□□□ 1.46
Chd3B1AR17 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
Chd3B1AR17 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
Chd3B1AR17 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC24.19■■□□□ 1.46
Chd3B1AR17 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC24.19■■□□□ 1.46
Chd3B1AR17 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC24.19■■□□□ 1.46
Chd3B1AR17 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Chd3B1AR17 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
Chd3B1AR17 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC24.16■■□□□ 1.46
Chd3B1AR17 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
Chd3B1AR17 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC24.14■■□□□ 1.46
Chd3B1AR17 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
Chd3B1AR17 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC24.14■■□□□ 1.45
Chd3B1AR17 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
Chd3B1AR17 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
Chd3B1AR17 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
Chd3B1AR17 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
Chd3B1AR17 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC24.13■■□□□ 1.45
Chd3B1AR17 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
Chd3B1AR17 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
Chd3B1AR17 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC24.11■■□□□ 1.45
Chd3B1AR17 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
Chd3B1AR17 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC24.11■■□□□ 1.45
Chd3B1AR17 Gm5987-201ENSMUST00000196433 1151 ntBASIC24.11■■□□□ 1.45
Chd3B1AR17 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
Chd3B1AR17 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC24.09■■□□□ 1.45
Chd3B1AR17 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC24.09■■□□□ 1.45
Chd3B1AR17 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC24.09■■□□□ 1.45
Chd3B1AR17 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
Chd3B1AR17 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC24.08■■□□□ 1.45
Chd3B1AR17 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
Chd3B1AR17 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC24.08■■□□□ 1.45
Chd3B1AR17 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC24.08■■□□□ 1.45
Chd3B1AR17 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC24.08■■□□□ 1.45
Chd3B1AR17 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC24.07■■□□□ 1.44
Chd3B1AR17 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
Chd3B1AR17 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC24.07■■□□□ 1.44
Chd3B1AR17 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC24.07■■□□□ 1.44
Chd3B1AR17 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
Chd3B1AR17 Zxda-201ENSMUST00000117281 2621 ntBASIC24.05■■□□□ 1.44
Chd3B1AR17 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
Chd3B1AR17 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC24.04■■□□□ 1.44
Chd3B1AR17 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
Chd3B1AR17 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC24.03■■□□□ 1.44
Chd3B1AR17 Nkain2-201ENSMUST00000092602 558 ntBASIC24.03■■□□□ 1.44
Chd3B1AR17 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
Chd3B1AR17 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
Chd3B1AR17 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC24.01■■□□□ 1.43
Chd3B1AR17 Pcf11-205ENSMUST00000208255 1720 ntBASIC24.01■■□□□ 1.43
Chd3B1AR17 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC24■■□□□ 1.43
Chd3B1AR17 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC24■■□□□ 1.43
Chd3B1AR17 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC24■■□□□ 1.43
Chd3B1AR17 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC24■■□□□ 1.43
Chd3B1AR17 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
Chd3B1AR17 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC23.98■■□□□ 1.43
Chd3B1AR17 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
Chd3B1AR17 Gm43445-201ENSMUST00000198564 2091 ntBASIC23.98■■□□□ 1.43
Chd3B1AR17 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
Chd3B1AR17 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC23.96■■□□□ 1.43
Chd3B1AR17 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC23.96■■□□□ 1.43
Chd3B1AR17 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC23.96■■□□□ 1.43
Chd3B1AR17 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC23.95■■□□□ 1.42
Chd3B1AR17 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC23.95■■□□□ 1.42
Chd3B1AR17 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC23.95■■□□□ 1.42
Chd3B1AR17 Gm7432-201ENSMUST00000210343 879 ntBASIC23.95■■□□□ 1.42
Chd3B1AR17 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC23.94■■□□□ 1.42
Chd3B1AR17 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
Chd3B1AR17 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
Chd3B1AR17 Gm6206-201ENSMUST00000133472 2199 ntBASIC23.93■■□□□ 1.42
Chd3B1AR17 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC23.93■■□□□ 1.42
Chd3B1AR17 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
Chd3B1AR17 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
Chd3B1AR17 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
Chd3B1AR17 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
Chd3B1AR17 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC23.91■■□□□ 1.42
Chd3B1AR17 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC23.91■■□□□ 1.42
Retrieved 100 of 76,532 protein–RNA pairs in 94.6 ms