Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 VPS53-216ENST00000574029 585 ntTSL 4 BASIC22.12■■□□□ 1.13
KRT39Q6A163 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC22.12■■□□□ 1.13
KRT39Q6A163 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
KRT39Q6A163 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
KRT39Q6A163 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC22.12■■□□□ 1.13
KRT39Q6A163 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
KRT39Q6A163 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC22.12■■□□□ 1.13
KRT39Q6A163 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC22.11■■□□□ 1.13
KRT39Q6A163 AC073314.1-201ENST00000568729 2216 ntBASIC22.11■■□□□ 1.13
KRT39Q6A163 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
KRT39Q6A163 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC22.11■■□□□ 1.13
KRT39Q6A163 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC22.11■■□□□ 1.13
KRT39Q6A163 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
KRT39Q6A163 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC22.11■■□□□ 1.13
KRT39Q6A163 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
KRT39Q6A163 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC22.11■■□□□ 1.13
KRT39Q6A163 BET1L-204ENST00000410108 637 ntTSL 3 BASIC22.11■■□□□ 1.13
KRT39Q6A163 APTR-203ENST00000430801 583 ntTSL 5 BASIC22.11■■□□□ 1.13
KRT39Q6A163 CYP2T1P-201ENST00000432607 1285 ntBASIC22.11■■□□□ 1.13
KRT39Q6A163 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
KRT39Q6A163 DLX3-202ENST00000512495 834 ntTSL 2 BASIC22.11■■□□□ 1.13
KRT39Q6A163 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC22.11■■□□□ 1.13
KRT39Q6A163 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
KRT39Q6A163 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC22.11■■□□□ 1.13
KRT39Q6A163 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC22.11■■□□□ 1.13
KRT39Q6A163 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC22.11■■□□□ 1.13
KRT39Q6A163 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC22.11■■□□□ 1.13
KRT39Q6A163 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
KRT39Q6A163 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
KRT39Q6A163 AP005212.1-201ENST00000581547 1997 ntBASIC22.1■■□□□ 1.13
KRT39Q6A163 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
KRT39Q6A163 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC22.1■■□□□ 1.13
KRT39Q6A163 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC22.1■■□□□ 1.13
KRT39Q6A163 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC22.1■■□□□ 1.13
KRT39Q6A163 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
KRT39Q6A163 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
KRT39Q6A163 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC22.1■■□□□ 1.13
KRT39Q6A163 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
KRT39Q6A163 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
KRT39Q6A163 CDCA4P2-201ENST00000441182 718 ntBASIC22.1■■□□□ 1.13
KRT39Q6A163 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
KRT39Q6A163 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC22.1■■□□□ 1.13
KRT39Q6A163 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC22.1■■□□□ 1.13
KRT39Q6A163 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
KRT39Q6A163 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC22.1■■□□□ 1.13
KRT39Q6A163 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC22.1■■□□□ 1.13
KRT39Q6A163 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC22.09■■□□□ 1.13
KRT39Q6A163 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC22.09■■□□□ 1.13
KRT39Q6A163 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC22.09■■□□□ 1.13
KRT39Q6A163 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC22.09■■□□□ 1.13
KRT39Q6A163 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC22.09■■□□□ 1.13
KRT39Q6A163 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC22.09■■□□□ 1.13
KRT39Q6A163 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC22.09■■□□□ 1.13
KRT39Q6A163 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC22.09■■□□□ 1.13
KRT39Q6A163 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC22.09■■□□□ 1.13
KRT39Q6A163 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC22.09■■□□□ 1.13
KRT39Q6A163 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC22.09■■□□□ 1.13
KRT39Q6A163 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC22.09■■□□□ 1.13
KRT39Q6A163 AC069236.1-201ENST00000604339 616 ntBASIC22.09■■□□□ 1.13
KRT39Q6A163 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC22.09■■□□□ 1.13
KRT39Q6A163 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC22.09■■□□□ 1.13
KRT39Q6A163 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
KRT39Q6A163 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC22.09■■□□□ 1.13
KRT39Q6A163 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
KRT39Q6A163 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
KRT39Q6A163 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
KRT39Q6A163 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC22.09■■□□□ 1.13
KRT39Q6A163 CYP21A1P-202ENST00000354927 1481 ntBASIC22.09■■□□□ 1.13
KRT39Q6A163 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC22.08■■□□□ 1.13
KRT39Q6A163 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
KRT39Q6A163 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
KRT39Q6A163 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC22.08■■□□□ 1.13
KRT39Q6A163 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC22.08■■□□□ 1.13
KRT39Q6A163 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
KRT39Q6A163 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
KRT39Q6A163 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
KRT39Q6A163 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC22.08■■□□□ 1.13
KRT39Q6A163 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC22.08■■□□□ 1.13
KRT39Q6A163 AC005181.1-201ENST00000604782 1256 ntBASIC22.08■■□□□ 1.13
KRT39Q6A163 AC100791.3-201ENST00000617619 330 ntBASIC22.08■■□□□ 1.13
KRT39Q6A163 AC008694.1-202ENST00000636953 945 ntBASIC22.08■■□□□ 1.13
KRT39Q6A163 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
KRT39Q6A163 LINC01006-201ENST00000333319 2292 ntBASIC22.08■■□□□ 1.12
KRT39Q6A163 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC22.08■■□□□ 1.12
KRT39Q6A163 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
KRT39Q6A163 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC22.07■■□□□ 1.12
KRT39Q6A163 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
KRT39Q6A163 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC22.07■■□□□ 1.12
KRT39Q6A163 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC22.07■■□□□ 1.12
KRT39Q6A163 GABARAPL3-202ENST00000624044 1851 ntBASIC22.07■■□□□ 1.12
KRT39Q6A163 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC22.07■■□□□ 1.12
KRT39Q6A163 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
KRT39Q6A163 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
KRT39Q6A163 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC22.07■■□□□ 1.12
KRT39Q6A163 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
KRT39Q6A163 RAP2CP1-201ENST00000605103 478 ntBASIC22.07■■□□□ 1.12
KRT39Q6A163 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC22.07■■□□□ 1.12
KRT39Q6A163 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC22.07■■□□□ 1.12
KRT39Q6A163 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
KRT39Q6A163 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC22.07■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms