Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CLCF1Q9UBD9 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CLCF1Q9UBD9 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CLCF1Q9UBD9 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CLCF1Q9UBD9 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC18.27■□□□□ 0.52
CLCF1Q9UBD9 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CLCF1Q9UBD9 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC18.27■□□□□ 0.52
CLCF1Q9UBD9 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC18.27■□□□□ 0.52
CLCF1Q9UBD9 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC18.27■□□□□ 0.52
CLCF1Q9UBD9 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC18.27■□□□□ 0.52
CLCF1Q9UBD9 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
CLCF1Q9UBD9 HES2-205ENST00000487437 968 ntTSL 3 BASIC18.27■□□□□ 0.52
CLCF1Q9UBD9 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC18.27■□□□□ 0.52
CLCF1Q9UBD9 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC18.27■□□□□ 0.52
CLCF1Q9UBD9 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC18.27■□□□□ 0.52
CLCF1Q9UBD9 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CLCF1Q9UBD9 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC18.27■□□□□ 0.52
CLCF1Q9UBD9 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CLCF1Q9UBD9 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC18.27■□□□□ 0.51
CLCF1Q9UBD9 STK25-234ENST00000535007 2459 ntTSL 2 BASIC18.27■□□□□ 0.51
CLCF1Q9UBD9 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
CLCF1Q9UBD9 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC18.27■□□□□ 0.51
CLCF1Q9UBD9 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CLCF1Q9UBD9 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CLCF1Q9UBD9 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CLCF1Q9UBD9 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CLCF1Q9UBD9 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CLCF1Q9UBD9 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC18.26■□□□□ 0.51
CLCF1Q9UBD9 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
CLCF1Q9UBD9 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
CLCF1Q9UBD9 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
CLCF1Q9UBD9 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CLCF1Q9UBD9 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CLCF1Q9UBD9 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CLCF1Q9UBD9 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CLCF1Q9UBD9 PGM5P4-201ENST00000421970 445 ntBASIC18.26■□□□□ 0.51
CLCF1Q9UBD9 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC18.26■□□□□ 0.51
CLCF1Q9UBD9 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC18.26■□□□□ 0.51
CLCF1Q9UBD9 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC18.26■□□□□ 0.51
CLCF1Q9UBD9 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC18.26■□□□□ 0.51
CLCF1Q9UBD9 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
CLCF1Q9UBD9 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CLCF1Q9UBD9 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC18.26■□□□□ 0.51
CLCF1Q9UBD9 HLA-B-256ENST00000639848 1089 ntBASIC18.26■□□□□ 0.51
CLCF1Q9UBD9 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CLCF1Q9UBD9 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC18.26■□□□□ 0.51
CLCF1Q9UBD9 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
CLCF1Q9UBD9 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CLCF1Q9UBD9 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CLCF1Q9UBD9 AC011484.1-201ENST00000377652 1995 ntBASIC18.26■□□□□ 0.51
CLCF1Q9UBD9 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC18.25■□□□□ 0.51
CLCF1Q9UBD9 NXN-202ENST00000537628 1340 ntTSL 3 BASIC18.25■□□□□ 0.51
CLCF1Q9UBD9 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC18.25■□□□□ 0.51
CLCF1Q9UBD9 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CLCF1Q9UBD9 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
CLCF1Q9UBD9 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC18.25■□□□□ 0.51
CLCF1Q9UBD9 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC18.25■□□□□ 0.51
CLCF1Q9UBD9 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC18.25■□□□□ 0.51
CLCF1Q9UBD9 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC18.25■□□□□ 0.51
CLCF1Q9UBD9 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CLCF1Q9UBD9 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CLCF1Q9UBD9 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
CLCF1Q9UBD9 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC18.25■□□□□ 0.51
CLCF1Q9UBD9 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CLCF1Q9UBD9 UNC93B5-201ENST00000530315 699 ntBASIC18.25■□□□□ 0.51
CLCF1Q9UBD9 AC060766.5-201ENST00000590539 871 ntBASIC18.25■□□□□ 0.51
CLCF1Q9UBD9 ITM2C-210ENST00000620962 501 ntBASIC18.25■□□□□ 0.51
CLCF1Q9UBD9 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
CLCF1Q9UBD9 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CLCF1Q9UBD9 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
CLCF1Q9UBD9 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CLCF1Q9UBD9 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CLCF1Q9UBD9 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC18.25■□□□□ 0.51
CLCF1Q9UBD9 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC18.25■□□□□ 0.51
CLCF1Q9UBD9 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
CLCF1Q9UBD9 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CLCF1Q9UBD9 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CLCF1Q9UBD9 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC18.24■□□□□ 0.51
CLCF1Q9UBD9 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CLCF1Q9UBD9 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
CLCF1Q9UBD9 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC18.24■□□□□ 0.51
CLCF1Q9UBD9 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CLCF1Q9UBD9 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CLCF1Q9UBD9 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC18.24■□□□□ 0.51
CLCF1Q9UBD9 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
CLCF1Q9UBD9 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC18.24■□□□□ 0.51
CLCF1Q9UBD9 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
CLCF1Q9UBD9 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
CLCF1Q9UBD9 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CLCF1Q9UBD9 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CLCF1Q9UBD9 AL024507.2-201ENST00000606070 2574 ntBASIC18.24■□□□□ 0.51
CLCF1Q9UBD9 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
CLCF1Q9UBD9 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC18.23■□□□□ 0.51
CLCF1Q9UBD9 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC18.23■□□□□ 0.51
CLCF1Q9UBD9 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC18.23■□□□□ 0.51
CLCF1Q9UBD9 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC18.23■□□□□ 0.51
CLCF1Q9UBD9 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC18.23■□□□□ 0.51
CLCF1Q9UBD9 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CLCF1Q9UBD9 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CLCF1Q9UBD9 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 51.4 ms