Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
MKS1Q9NXB0 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC20.27■□□□□ 0.84
MKS1Q9NXB0 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC20.27■□□□□ 0.84
MKS1Q9NXB0 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
MKS1Q9NXB0 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
MKS1Q9NXB0 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
MKS1Q9NXB0 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC20.27■□□□□ 0.84
MKS1Q9NXB0 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC20.27■□□□□ 0.84
MKS1Q9NXB0 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
MKS1Q9NXB0 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC20.27■□□□□ 0.84
MKS1Q9NXB0 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC20.27■□□□□ 0.84
MKS1Q9NXB0 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
MKS1Q9NXB0 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC20.27■□□□□ 0.84
MKS1Q9NXB0 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
MKS1Q9NXB0 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
MKS1Q9NXB0 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC20.27■□□□□ 0.84
MKS1Q9NXB0 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.83
MKS1Q9NXB0 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.83
MKS1Q9NXB0 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
MKS1Q9NXB0 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC20.27■□□□□ 0.83
MKS1Q9NXB0 KRT16P2-201ENST00000414673 1423 ntBASIC20.27■□□□□ 0.83
MKS1Q9NXB0 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC20.27■□□□□ 0.83
MKS1Q9NXB0 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC20.26■□□□□ 0.83
MKS1Q9NXB0 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
MKS1Q9NXB0 AC245052.3-201ENST00000450182 901 ntBASIC20.26■□□□□ 0.83
MKS1Q9NXB0 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC20.26■□□□□ 0.83
MKS1Q9NXB0 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
MKS1Q9NXB0 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
MKS1Q9NXB0 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
MKS1Q9NXB0 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC20.26■□□□□ 0.83
MKS1Q9NXB0 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
MKS1Q9NXB0 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC20.26■□□□□ 0.83
MKS1Q9NXB0 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
MKS1Q9NXB0 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
MKS1Q9NXB0 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
MKS1Q9NXB0 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
MKS1Q9NXB0 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC20.25■□□□□ 0.83
MKS1Q9NXB0 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
MKS1Q9NXB0 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC20.25■□□□□ 0.83
MKS1Q9NXB0 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
MKS1Q9NXB0 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
MKS1Q9NXB0 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC20.25■□□□□ 0.83
MKS1Q9NXB0 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
MKS1Q9NXB0 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC20.25■□□□□ 0.83
MKS1Q9NXB0 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC20.25■□□□□ 0.83
MKS1Q9NXB0 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
MKS1Q9NXB0 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
MKS1Q9NXB0 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
MKS1Q9NXB0 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC20.24■□□□□ 0.83
MKS1Q9NXB0 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
MKS1Q9NXB0 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC20.24■□□□□ 0.83
MKS1Q9NXB0 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
MKS1Q9NXB0 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
MKS1Q9NXB0 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC20.24■□□□□ 0.83
MKS1Q9NXB0 AP001330.3-201ENST00000520123 633 ntBASIC20.24■□□□□ 0.83
MKS1Q9NXB0 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC20.24■□□□□ 0.83
MKS1Q9NXB0 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
MKS1Q9NXB0 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
MKS1Q9NXB0 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
MKS1Q9NXB0 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
MKS1Q9NXB0 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
MKS1Q9NXB0 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
MKS1Q9NXB0 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
MKS1Q9NXB0 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
MKS1Q9NXB0 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
MKS1Q9NXB0 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC20.24■□□□□ 0.83
MKS1Q9NXB0 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
MKS1Q9NXB0 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
MKS1Q9NXB0 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
MKS1Q9NXB0 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
MKS1Q9NXB0 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
MKS1Q9NXB0 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
MKS1Q9NXB0 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
MKS1Q9NXB0 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC20.23■□□□□ 0.83
MKS1Q9NXB0 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC20.23■□□□□ 0.83
MKS1Q9NXB0 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC20.23■□□□□ 0.83
MKS1Q9NXB0 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC20.23■□□□□ 0.83
MKS1Q9NXB0 AC138907.5-202ENST00000569484 235 ntBASIC20.23■□□□□ 0.83
MKS1Q9NXB0 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC20.23■□□□□ 0.83
MKS1Q9NXB0 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
MKS1Q9NXB0 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
MKS1Q9NXB0 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
MKS1Q9NXB0 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
MKS1Q9NXB0 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
MKS1Q9NXB0 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC20.23■□□□□ 0.83
MKS1Q9NXB0 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC20.23■□□□□ 0.83
MKS1Q9NXB0 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC20.23■□□□□ 0.83
MKS1Q9NXB0 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
MKS1Q9NXB0 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
MKS1Q9NXB0 LBX2-AS1-202ENST00000603175 2083 ntBASIC20.22■□□□□ 0.83
MKS1Q9NXB0 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
MKS1Q9NXB0 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
MKS1Q9NXB0 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC20.22■□□□□ 0.83
MKS1Q9NXB0 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC20.22■□□□□ 0.83
MKS1Q9NXB0 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
MKS1Q9NXB0 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
MKS1Q9NXB0 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC20.22■□□□□ 0.83
MKS1Q9NXB0 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
MKS1Q9NXB0 AC116562.4-201ENST00000641316 2276 ntBASIC20.22■□□□□ 0.83
MKS1Q9NXB0 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms