Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC20.75■□□□□ 0.91
TNFRSF4P43489 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TNFRSF4P43489 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TNFRSF4P43489 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TNFRSF4P43489 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TNFRSF4P43489 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TNFRSF4P43489 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
TNFRSF4P43489 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC20.75■□□□□ 0.91
TNFRSF4P43489 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC20.75■□□□□ 0.91
TNFRSF4P43489 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TNFRSF4P43489 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TNFRSF4P43489 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC20.75■□□□□ 0.91
TNFRSF4P43489 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TNFRSF4P43489 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TNFRSF4P43489 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TNFRSF4P43489 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
TNFRSF4P43489 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TNFRSF4P43489 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
TNFRSF4P43489 ISG20-202ENST00000379224 540 ntTSL 3 BASIC20.74■□□□□ 0.91
TNFRSF4P43489 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
TNFRSF4P43489 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TNFRSF4P43489 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC20.74■□□□□ 0.91
TNFRSF4P43489 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC20.74■□□□□ 0.91
TNFRSF4P43489 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TNFRSF4P43489 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC20.74■□□□□ 0.91
TNFRSF4P43489 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TNFRSF4P43489 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC20.74■□□□□ 0.91
TNFRSF4P43489 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TNFRSF4P43489 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC20.73■□□□□ 0.91
TNFRSF4P43489 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TNFRSF4P43489 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
TNFRSF4P43489 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
TNFRSF4P43489 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
TNFRSF4P43489 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
TNFRSF4P43489 AL390719.1-204ENST00000412397 1219 ntBASIC20.73■□□□□ 0.91
TNFRSF4P43489 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
TNFRSF4P43489 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
TNFRSF4P43489 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC20.73■□□□□ 0.91
TNFRSF4P43489 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC20.73■□□□□ 0.91
TNFRSF4P43489 MIR4497-201ENST00000583208 89 ntBASIC20.73■□□□□ 0.91
TNFRSF4P43489 Z99916.2-201ENST00000604037 246 ntBASIC20.73■□□□□ 0.91
TNFRSF4P43489 MTDHP1-201ENST00000605323 784 ntBASIC20.73■□□□□ 0.91
TNFRSF4P43489 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
TNFRSF4P43489 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC20.73■□□□□ 0.91
TNFRSF4P43489 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC20.73■□□□□ 0.91
TNFRSF4P43489 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
TNFRSF4P43489 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TNFRSF4P43489 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC20.73■□□□□ 0.91
TNFRSF4P43489 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TNFRSF4P43489 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC20.72■□□□□ 0.91
TNFRSF4P43489 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC20.72■□□□□ 0.91
TNFRSF4P43489 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
TNFRSF4P43489 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TNFRSF4P43489 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
TNFRSF4P43489 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
TNFRSF4P43489 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TNFRSF4P43489 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
TNFRSF4P43489 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC20.72■□□□□ 0.91
TNFRSF4P43489 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
TNFRSF4P43489 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC20.72■□□□□ 0.91
TNFRSF4P43489 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
TNFRSF4P43489 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
TNFRSF4P43489 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC20.72■□□□□ 0.91
TNFRSF4P43489 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TNFRSF4P43489 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TNFRSF4P43489 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
TNFRSF4P43489 PARN-205ENST00000539279 1557 ntTSL 2 BASIC20.72■□□□□ 0.91
TNFRSF4P43489 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TNFRSF4P43489 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC20.72■□□□□ 0.91
TNFRSF4P43489 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC20.71■□□□□ 0.91
TNFRSF4P43489 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TNFRSF4P43489 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
TNFRSF4P43489 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TNFRSF4P43489 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TNFRSF4P43489 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TNFRSF4P43489 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC20.71■□□□□ 0.91
TNFRSF4P43489 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
TNFRSF4P43489 THEM4-205ENST00000489410 643 ntTSL 2 BASIC20.71■□□□□ 0.91
TNFRSF4P43489 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC20.71■□□□□ 0.91
TNFRSF4P43489 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC20.71■□□□□ 0.91
TNFRSF4P43489 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
TNFRSF4P43489 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
TNFRSF4P43489 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC20.71■□□□□ 0.91
TNFRSF4P43489 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC20.71■□□□□ 0.91
TNFRSF4P43489 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
TNFRSF4P43489 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC20.71■□□□□ 0.91
TNFRSF4P43489 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
TNFRSF4P43489 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TNFRSF4P43489 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC20.71■□□□□ 0.91
TNFRSF4P43489 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
TNFRSF4P43489 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC20.7■□□□□ 0.91
TNFRSF4P43489 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC20.7■□□□□ 0.9
TNFRSF4P43489 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
TNFRSF4P43489 AC011484.1-201ENST00000377652 1995 ntBASIC20.7■□□□□ 0.9
TNFRSF4P43489 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
TNFRSF4P43489 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC20.7■□□□□ 0.9
TNFRSF4P43489 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TNFRSF4P43489 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
TNFRSF4P43489 DYM-203ENST00000442713 2147 ntTSL 2 BASIC20.7■□□□□ 0.9
TNFRSF4P43489 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 58 ms