Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
PTPN9P43378 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
PTPN9P43378 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
PTPN9P43378 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
PTPN9P43378 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
PTPN9P43378 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC21.36■■□□□ 1.01
PTPN9P43378 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
PTPN9P43378 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC21.36■■□□□ 1.01
PTPN9P43378 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
PTPN9P43378 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
PTPN9P43378 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC21.36■■□□□ 1.01
PTPN9P43378 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC21.36■■□□□ 1.01
PTPN9P43378 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC21.36■■□□□ 1.01
PTPN9P43378 RAP2CP1-201ENST00000605103 478 ntBASIC21.36■■□□□ 1.01
PTPN9P43378 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC21.36■■□□□ 1.01
PTPN9P43378 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
PTPN9P43378 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
PTPN9P43378 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC21.36■■□□□ 1.01
PTPN9P43378 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
PTPN9P43378 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
PTPN9P43378 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC21.36■■□□□ 1.01
PTPN9P43378 AL121603.2-201ENST00000557373 2117 ntBASIC21.35■■□□□ 1.01
PTPN9P43378 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC21.35■■□□□ 1.01
PTPN9P43378 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC21.35■■□□□ 1.01
PTPN9P43378 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
PTPN9P43378 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC21.35■■□□□ 1.01
PTPN9P43378 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
PTPN9P43378 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
PTPN9P43378 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC21.35■■□□□ 1.01
PTPN9P43378 AC100791.3-201ENST00000617619 330 ntBASIC21.35■■□□□ 1.01
PTPN9P43378 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC21.35■■□□□ 1.01
PTPN9P43378 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
PTPN9P43378 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC21.35■■□□□ 1.01
PTPN9P43378 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC21.35■■□□□ 1.01
PTPN9P43378 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC21.35■■□□□ 1.01
PTPN9P43378 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC21.35■■□□□ 1.01
PTPN9P43378 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
PTPN9P43378 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
PTPN9P43378 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
PTPN9P43378 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
PTPN9P43378 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC21.34■■□□□ 1.01
PTPN9P43378 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
PTPN9P43378 CYP21A1P-202ENST00000354927 1481 ntBASIC21.34■■□□□ 1.01
PTPN9P43378 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC21.34■■□□□ 1.01
PTPN9P43378 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
PTPN9P43378 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
PTPN9P43378 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
PTPN9P43378 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
PTPN9P43378 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC21.34■■□□□ 1.01
PTPN9P43378 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
PTPN9P43378 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC21.34■■□□□ 1.01
PTPN9P43378 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC21.34■■□□□ 1.01
PTPN9P43378 AC069236.1-201ENST00000604339 616 ntBASIC21.34■■□□□ 1.01
PTPN9P43378 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC21.34■■□□□ 1.01
PTPN9P43378 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
PTPN9P43378 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
PTPN9P43378 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
PTPN9P43378 AP005212.1-201ENST00000581547 1997 ntBASIC21.34■■□□□ 1.01
PTPN9P43378 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
PTPN9P43378 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
PTPN9P43378 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
PTPN9P43378 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
PTPN9P43378 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC21.33■■□□□ 1.01
PTPN9P43378 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
PTPN9P43378 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC21.33■■□□□ 1.01
PTPN9P43378 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC21.33■■□□□ 1.01
PTPN9P43378 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
PTPN9P43378 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC21.33■■□□□ 1.01
PTPN9P43378 AC087633.2-202ENST00000565166 1439 ntBASIC21.33■■□□□ 1.01
PTPN9P43378 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
PTPN9P43378 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
PTPN9P43378 AC005181.1-201ENST00000604782 1256 ntBASIC21.33■■□□□ 1.01
PTPN9P43378 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
PTPN9P43378 OR10C1-204ENST00000622521 1039 ntBASIC21.33■■□□□ 1.01
PTPN9P43378 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
PTPN9P43378 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
PTPN9P43378 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1
PTPN9P43378 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
PTPN9P43378 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
PTPN9P43378 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
PTPN9P43378 PKD1P6-201ENST00000343738 4769 ntBASIC21.32■■□□□ 1
PTPN9P43378 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
PTPN9P43378 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC21.32■■□□□ 1
PTPN9P43378 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
PTPN9P43378 KRT8P36-201ENST00000489121 1440 ntBASIC21.32■■□□□ 1
PTPN9P43378 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
PTPN9P43378 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC21.32■■□□□ 1
PTPN9P43378 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC21.32■■□□□ 1
PTPN9P43378 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
PTPN9P43378 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC21.32■■□□□ 1
PTPN9P43378 AC026185.1-201ENST00000445748 174 ntBASIC21.32■■□□□ 1
PTPN9P43378 AC073314.1-201ENST00000568729 2216 ntBASIC21.32■■□□□ 1
PTPN9P43378 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC21.32■■□□□ 1
PTPN9P43378 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
PTPN9P43378 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
PTPN9P43378 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC21.31■■□□□ 1
PTPN9P43378 GABARAPL3-202ENST00000624044 1851 ntBASIC21.31■■□□□ 1
PTPN9P43378 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
PTPN9P43378 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC21.31■■□□□ 1
PTPN9P43378 PGM5P4-201ENST00000421970 445 ntBASIC21.31■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 13.8 ms