Protein–RNA interactions for Protein: P40968

CDC40, Pre-mRNA-processing factor 17, yeastyeast

Predicted RBP Predictions only

Length 455 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
CDC40P40968 CDC60YPL160W 3273 nt1.95□□□□□ -2.1
CDC40P40968 CDC50YCR094W 1176 nt1.95□□□□□ -2.1
CDC40P40968 UBC5YDR059C 447 nt1.95□□□□□ -2.1
CDC40P40968 TSA2YDR453C 591 nt1.95□□□□□ -2.1
CDC40P40968 SEC28YIL076W 891 nt1.95□□□□□ -2.1
CDC40P40968 SNC1YAL030W 354 nt1.95□□□□□ -2.1
CDC40P40968 RAM2YKL019W 951 nt1.95□□□□□ -2.1
CDC40P40968 PDR1YGL013C 3207 nt1.95□□□□□ -2.1
CDC40P40968 NDD1YOR372C 1665 nt1.95□□□□□ -2.1
CDC40P40968 PET309YLR067C 2898 nt1.95□□□□□ -2.1
CDC40P40968 IST2YBR086C 2841 nt1.95□□□□□ -2.1
CDC40P40968 YPR097WYPR097W 3222 nt1.95□□□□□ -2.1
CDC40P40968 YHR078WYHR078W 1659 nt1.94□□□□□ -2.1
CDC40P40968 AHC2YCR082W 387 nt1.94□□□□□ -2.1
CDC40P40968 YGL014C-AYGL014C-A 162 nt1.94□□□□□ -2.1
CDC40P40968 HYR1YIR037W 492 nt1.94□□□□□ -2.1
CDC40P40968 YKR051WYKR051W 1257 nt1.94□□□□□ -2.1
CDC40P40968 GRX5YPL059W 453 nt1.94□□□□□ -2.1
CDC40P40968 YPL150WYPL150W 2706 nt1.94□□□□□ -2.1
CDC40P40968 STE11YLR362W 2154 nt1.93□□□□□ -2.1
CDC40P40968 snR59snR59 78 nt1.93□□□□□ -2.1
CDC40P40968 RAD6YGL058W 519 nt1.93□□□□□ -2.1
CDC40P40968 YIL058WYIL058W 285 nt1.93□□□□□ -2.1
CDC40P40968 YJR023CYJR023C 402 nt1.93□□□□□ -2.1
CDC40P40968 YKL066WYKL066W 444 nt1.93□□□□□ -2.1
CDC40P40968 SDS22YKL193C 1017 nt1.93□□□□□ -2.1
CDC40P40968 YAL059C-AYAL059C-A 423 nt1.93□□□□□ -2.1
CDC40P40968 LSM2YBL026W 288 nt1.93□□□□□ -2.1
CDC40P40968 RUD3YOR216C 1455 nt1.93□□□□□ -2.1
CDC40P40968 HER1YOR227W 3741 nt1.93□□□□□ -2.1
CDC40P40968 MCD1YDL003W 1701 nt1.92□□□□□ -2.1
CDC40P40968 snR5snR5 204 nt1.92□□□□□ -2.1
CDC40P40968 IST3YIR005W 447 nt1.92□□□□□ -2.1
CDC40P40968 YKR075W-AYKR075W-A 270 nt1.92□□□□□ -2.1
CDC40P40968 ATG38YLR211C 681 nt1.92□□□□□ -2.1
CDC40P40968 HRI1YLR301W 735 nt1.92□□□□□ -2.1
CDC40P40968 YNL150WYNL150W 408 nt1.92□□□□□ -2.1
CDC40P40968 RIO2YNL207W 1278 nt1.92□□□□□ -2.1
CDC40P40968 YNL235CYNL235C 432 nt1.92□□□□□ -2.1
CDC40P40968 YCL002CYCL002C 792 nt1.92□□□□□ -2.1
CDC40P40968 SMC6YLR383W 3345 nt1.92□□□□□ -2.1
CDC40P40968 NCL1YBL024W 2055 nt1.92□□□□□ -2.1
CDC40P40968 YOR343W-BYOR343W-B 5313 nt1.91□□□□□ -2.1
CDC40P40968 SHE4YOR035C 2370 nt1.91□□□□□ -2.1
CDC40P40968 IPT1YDR072C 1584 nt1.91□□□□□ -2.1
CDC40P40968 YDL025W-AYDL025W-A 105 nt1.91□□□□□ -2.1
CDC40P40968 snR83snR83 306 nt1.91□□□□□ -2.1
CDC40P40968 YDR537CYDR537C 606 nt1.91□□□□□ -2.1
CDC40P40968 YGL042CYGL042C 306 nt1.91□□□□□ -2.1
CDC40P40968 YNL319WYNL319W 441 nt1.91□□□□□ -2.1
CDC40P40968 ATX2YOR079C 942 nt1.91□□□□□ -2.1
CDC40P40968 YOR333CYOR333C 417 nt1.91□□□□□ -2.1
CDC40P40968 TAZ1YPR140W 1146 nt1.91□□□□□ -2.1
CDC40P40968 NAB6YML117W 3405 nt1.91□□□□□ -2.1
CDC40P40968 PDR11YIL013C 4236 nt1.91□□□□□ -2.1
CDC40P40968 YDL163WYDL163W 303 nt1.9□□□□□ -2.11
CDC40P40968 tR(UCU)Q1tR(UCU)Q1 73 nt1.9□□□□□ -2.11
CDC40P40968 DFG10YIL049W 762 nt1.9□□□□□ -2.11
CDC40P40968 YML084WYML084W 309 nt1.9□□□□□ -2.11
CDC40P40968 TAP42YMR028W 1101 nt1.9□□□□□ -2.11
CDC40P40968 GIM3YNL153C 390 nt1.9□□□□□ -2.11
CDC40P40968 YBR063CYBR063C 1215 nt1.9□□□□□ -2.11
CDC40P40968 ALG14YBR070C 714 nt1.9□□□□□ -2.11
CDC40P40968 SLM4YBR077C 489 nt1.9□□□□□ -2.11
CDC40P40968 TRS20YBR254C 528 nt1.9□□□□□ -2.11
CDC40P40968 RRI2YOL117W 1938 nt1.89□□□□□ -2.11
CDC40P40968 YHR214C-BYHR214C-B 5382 nt1.89□□□□□ -2.11
CDC40P40968 AAD16YFL057C 459 nt1.89□□□□□ -2.11
CDC40P40968 FAR7YFR008W 666 nt1.89□□□□□ -2.11
CDC40P40968 tW(CCA)G1tW(CCA)G1 72 nt1.89□□□□□ -2.11
CDC40P40968 tW(CCA)G2tW(CCA)G2 72 nt1.89□□□□□ -2.11
CDC40P40968 tW(CCA)JtW(CCA)J 72 nt1.89□□□□□ -2.11
CDC40P40968 tW(CCA)KtW(CCA)K 72 nt1.89□□□□□ -2.11
CDC40P40968 tW(CCA)MtW(CCA)M 72 nt1.89□□□□□ -2.11
CDC40P40968 tW(CCA)PtW(CCA)P 72 nt1.89□□□□□ -2.11
CDC40P40968 UBC12YLR306W 567 nt1.89□□□□□ -2.11
CDC40P40968 ERG29YMR134W 714 nt1.89□□□□□ -2.11
CDC40P40968 MGR1YCL044C 1254 nt1.89□□□□□ -2.11
CDC40P40968 GCN2YDR283C 4980 nt1.89□□□□□ -2.11
CDC40P40968 NOP14YDL148C 2433 nt1.89□□□□□ -2.11
CDC40P40968 CRD1YDL142C 852 nt1.88□□□□□ -2.11
CDC40P40968 RPL29YFR032C-A 180 nt1.88□□□□□ -2.11
CDC40P40968 SPO11YHL022C 1197 nt1.88□□□□□ -2.11
CDC40P40968 ACF4YJR083C 930 nt1.88□□□□□ -2.11
CDC40P40968 SRP21YKL122C 504 nt1.88□□□□□ -2.11
CDC40P40968 AIM32YML050W 936 nt1.88□□□□□ -2.11
CDC40P40968 MGA2YIR033W 3342 nt1.88□□□□□ -2.11
CDC40P40968 MNE1YOR350C 1992 nt1.88□□□□□ -2.11
CDC40P40968 YFL002W-BYFL002W-B 1317 nt1.88□□□□□ -2.11
CDC40P40968 YGR161W-AYGR161W-A 1317 nt1.88□□□□□ -2.11
CDC40P40968 YBL100W-AYBL100W-A 1317 nt1.88□□□□□ -2.11
CDC40P40968 YCL020WYCL020W 1317 nt1.88□□□□□ -2.11
CDC40P40968 YDL009CYDL009C 324 nt1.87□□□□□ -2.11
CDC40P40968 IRC2YDR112W 309 nt1.87□□□□□ -2.11
CDC40P40968 Q0255Q0255 1419 nt1.87□□□□□ -2.11
CDC40P40968 YJL119CYJL119C 324 nt1.87□□□□□ -2.11
CDC40P40968 CAT2YML042W 2013 nt1.87□□□□□ -2.11
CDC40P40968 PRE8YML092C 753 nt1.87□□□□□ -2.11
CDC40P40968 LSM7YNL147W 348 nt1.87□□□□□ -2.11
CDC40P40968 YPL276WYPL276W 438 nt1.87□□□□□ -2.11
Retrieved 100 of 7,029 protein–RNA pairs in 17.6 ms