Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 VMO1-204ENST00000441199 741 ntTSL 2 BASIC20.42■□□□□ 0.86
VPS35Q96QK1 AF201337.1-201ENST00000520239 748 ntBASIC20.42■□□□□ 0.86
VPS35Q96QK1 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
VPS35Q96QK1 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC20.42■□□□□ 0.86
VPS35Q96QK1 AC100791.3-201ENST00000617619 330 ntBASIC20.42■□□□□ 0.86
VPS35Q96QK1 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC20.42■□□□□ 0.86
VPS35Q96QK1 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC20.42■□□□□ 0.86
VPS35Q96QK1 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
VPS35Q96QK1 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC20.42■□□□□ 0.86
VPS35Q96QK1 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
VPS35Q96QK1 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
VPS35Q96QK1 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
VPS35Q96QK1 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
VPS35Q96QK1 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC20.41■□□□□ 0.86
VPS35Q96QK1 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC20.41■□□□□ 0.86
VPS35Q96QK1 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
VPS35Q96QK1 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
VPS35Q96QK1 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
VPS35Q96QK1 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
VPS35Q96QK1 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
VPS35Q96QK1 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC20.41■□□□□ 0.86
VPS35Q96QK1 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
VPS35Q96QK1 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
VPS35Q96QK1 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VPS35Q96QK1 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
VPS35Q96QK1 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VPS35Q96QK1 GPX1P1-201ENST00000388829 606 ntBASIC20.4■□□□□ 0.86
VPS35Q96QK1 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
VPS35Q96QK1 USP48-205ENST00000421625 2818 ntTSL 2 BASIC20.4■□□□□ 0.86
VPS35Q96QK1 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC20.4■□□□□ 0.86
VPS35Q96QK1 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC20.4■□□□□ 0.86
VPS35Q96QK1 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
VPS35Q96QK1 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC20.4■□□□□ 0.86
VPS35Q96QK1 AC083906.2-201ENST00000511578 360 ntBASIC20.4■□□□□ 0.86
VPS35Q96QK1 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC20.4■□□□□ 0.86
VPS35Q96QK1 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
VPS35Q96QK1 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC20.4■□□□□ 0.86
VPS35Q96QK1 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
VPS35Q96QK1 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
VPS35Q96QK1 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC20.4■□□□□ 0.86
VPS35Q96QK1 GXYLT1P5-201ENST00000614548 1189 ntBASIC20.4■□□□□ 0.86
VPS35Q96QK1 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC20.4■□□□□ 0.86
VPS35Q96QK1 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VPS35Q96QK1 AC121338.2-201ENST00000622535 1744 ntBASIC20.4■□□□□ 0.86
VPS35Q96QK1 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
VPS35Q96QK1 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
VPS35Q96QK1 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
VPS35Q96QK1 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
VPS35Q96QK1 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
VPS35Q96QK1 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
VPS35Q96QK1 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC20.39■□□□□ 0.86
VPS35Q96QK1 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
VPS35Q96QK1 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
VPS35Q96QK1 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC20.39■□□□□ 0.85
VPS35Q96QK1 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC20.39■□□□□ 0.85
VPS35Q96QK1 AC105036.2-201ENST00000569468 176 ntBASIC20.39■□□□□ 0.85
VPS35Q96QK1 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC20.39■□□□□ 0.85
VPS35Q96QK1 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC20.39■□□□□ 0.85
VPS35Q96QK1 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
VPS35Q96QK1 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC20.39■□□□□ 0.85
VPS35Q96QK1 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
VPS35Q96QK1 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
VPS35Q96QK1 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
VPS35Q96QK1 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC20.38■□□□□ 0.85
VPS35Q96QK1 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC20.38■□□□□ 0.85
VPS35Q96QK1 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
VPS35Q96QK1 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
VPS35Q96QK1 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
VPS35Q96QK1 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
VPS35Q96QK1 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC20.38■□□□□ 0.85
VPS35Q96QK1 AC093787.1-201ENST00000450396 207 ntBASIC20.38■□□□□ 0.85
VPS35Q96QK1 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC20.38■□□□□ 0.85
VPS35Q96QK1 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC20.38■□□□□ 0.85
VPS35Q96QK1 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
VPS35Q96QK1 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
VPS35Q96QK1 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
VPS35Q96QK1 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
VPS35Q96QK1 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
VPS35Q96QK1 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
VPS35Q96QK1 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
VPS35Q96QK1 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC20.38■□□□□ 0.85
VPS35Q96QK1 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC20.38■□□□□ 0.85
VPS35Q96QK1 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC20.37■□□□□ 0.85
VPS35Q96QK1 AC010980.2-201ENST00000587099 1412 ntBASIC20.37■□□□□ 0.85
VPS35Q96QK1 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
VPS35Q96QK1 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
VPS35Q96QK1 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VPS35Q96QK1 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC20.37■□□□□ 0.85
VPS35Q96QK1 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC20.37■□□□□ 0.85
VPS35Q96QK1 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VPS35Q96QK1 GUSBP6-202ENST00000438529 1198 ntBASIC20.37■□□□□ 0.85
VPS35Q96QK1 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC20.37■□□□□ 0.85
VPS35Q96QK1 WT1-AS_3.1-201ENST00000613262 234 ntBASIC20.37■□□□□ 0.85
VPS35Q96QK1 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
VPS35Q96QK1 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
VPS35Q96QK1 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VPS35Q96QK1 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC20.37■□□□□ 0.85
VPS35Q96QK1 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
VPS35Q96QK1 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
VPS35Q96QK1 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC20.37■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms