Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
SYNE1Q8NF91 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
SYNE1Q8NF91 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC6.31□□□□□ -1.4
SYNE1Q8NF91 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
SYNE1Q8NF91 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
SYNE1Q8NF91 AC092667.1-201ENST00000434301 2586 ntBASIC6.31□□□□□ -1.4
SYNE1Q8NF91 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
SYNE1Q8NF91 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
SYNE1Q8NF91 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
SYNE1Q8NF91 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC6.31□□□□□ -1.4
SYNE1Q8NF91 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
SYNE1Q8NF91 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
SYNE1Q8NF91 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
SYNE1Q8NF91 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC6.31□□□□□ -1.4
SYNE1Q8NF91 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC6.31□□□□□ -1.4
SYNE1Q8NF91 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
SYNE1Q8NF91 SLC29A4P2-201ENST00000504749 1089 ntBASIC6.31□□□□□ -1.4
SYNE1Q8NF91 USP36-216ENST00000589424 970 ntTSL 5 BASIC6.31□□□□□ -1.4
SYNE1Q8NF91 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
SYNE1Q8NF91 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
SYNE1Q8NF91 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
SYNE1Q8NF91 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
SYNE1Q8NF91 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC6.31□□□□□ -1.4
SYNE1Q8NF91 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
SYNE1Q8NF91 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
SYNE1Q8NF91 AC026366.1-201ENST00000488803 879 ntBASIC6.31□□□□□ -1.4
SYNE1Q8NF91 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
SYNE1Q8NF91 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC6.31□□□□□ -1.4
SYNE1Q8NF91 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
SYNE1Q8NF91 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC6.31□□□□□ -1.4
SYNE1Q8NF91 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC6.31□□□□□ -1.4
SYNE1Q8NF91 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC6.31□□□□□ -1.4
SYNE1Q8NF91 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
SYNE1Q8NF91 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC6.31□□□□□ -1.4
SYNE1Q8NF91 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC6.31□□□□□ -1.4
SYNE1Q8NF91 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
SYNE1Q8NF91 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC6.31□□□□□ -1.4
SYNE1Q8NF91 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
SYNE1Q8NF91 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC6.31□□□□□ -1.4
SYNE1Q8NF91 LSM12P1-201ENST00000411836 588 ntBASIC6.31□□□□□ -1.4
SYNE1Q8NF91 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC6.31□□□□□ -1.4
SYNE1Q8NF91 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC6.31□□□□□ -1.4
SYNE1Q8NF91 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC6.31□□□□□ -1.4
SYNE1Q8NF91 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC6.31□□□□□ -1.4
SYNE1Q8NF91 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
SYNE1Q8NF91 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
SYNE1Q8NF91 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC6.31□□□□□ -1.4
SYNE1Q8NF91 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC6.3□□□□□ -1.4
SYNE1Q8NF91 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC6.3□□□□□ -1.4
SYNE1Q8NF91 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC6.3□□□□□ -1.4
SYNE1Q8NF91 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC6.3□□□□□ -1.4
SYNE1Q8NF91 AC008403.3-201ENST00000598924 454 ntBASIC6.3□□□□□ -1.4
SYNE1Q8NF91 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC6.3□□□□□ -1.4
SYNE1Q8NF91 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
SYNE1Q8NF91 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC6.3□□□□□ -1.4
SYNE1Q8NF91 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC6.3□□□□□ -1.4
SYNE1Q8NF91 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC6.3□□□□□ -1.4
SYNE1Q8NF91 AC053503.5-201ENST00000601508 636 ntBASIC6.3□□□□□ -1.4
SYNE1Q8NF91 AC008175.2-201ENST00000612840 297 ntBASIC6.3□□□□□ -1.4
SYNE1Q8NF91 AL359736.2-201ENST00000621992 437 ntBASIC6.3□□□□□ -1.4
SYNE1Q8NF91 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
SYNE1Q8NF91 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC6.3□□□□□ -1.4
SYNE1Q8NF91 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
SYNE1Q8NF91 AC061975.6-201ENST00000579045 1553 ntBASIC6.3□□□□□ -1.4
SYNE1Q8NF91 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC6.3□□□□□ -1.4
SYNE1Q8NF91 RNF121-214ENST00000533380 870 ntTSL 3 BASIC6.3□□□□□ -1.4
SYNE1Q8NF91 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
SYNE1Q8NF91 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC6.3□□□□□ -1.4
SYNE1Q8NF91 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC6.3□□□□□ -1.4
SYNE1Q8NF91 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC6.3□□□□□ -1.4
SYNE1Q8NF91 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC6.3□□□□□ -1.4
SYNE1Q8NF91 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC6.3□□□□□ -1.4
SYNE1Q8NF91 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
SYNE1Q8NF91 AC010980.2-201ENST00000587099 1412 ntBASIC6.3□□□□□ -1.4
SYNE1Q8NF91 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
SYNE1Q8NF91 AC010542.4-201ENST00000563151 1910 ntBASIC6.3□□□□□ -1.4
SYNE1Q8NF91 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
SYNE1Q8NF91 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC6.3□□□□□ -1.4
SYNE1Q8NF91 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC6.3□□□□□ -1.4
SYNE1Q8NF91 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC6.3□□□□□ -1.4
SYNE1Q8NF91 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
SYNE1Q8NF91 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC6.3□□□□□ -1.4
SYNE1Q8NF91 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC6.3□□□□□ -1.4
SYNE1Q8NF91 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
SYNE1Q8NF91 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
SYNE1Q8NF91 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC6.3□□□□□ -1.4
SYNE1Q8NF91 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC6.3□□□□□ -1.4
SYNE1Q8NF91 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
SYNE1Q8NF91 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC6.3□□□□□ -1.4
SYNE1Q8NF91 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC6.3□□□□□ -1.4
SYNE1Q8NF91 BX276092.2-201ENST00000417668 665 ntBASIC6.3□□□□□ -1.4
SYNE1Q8NF91 MIR4758-201ENST00000577688 71 ntBASIC6.3□□□□□ -1.4
SYNE1Q8NF91 AC069236.1-201ENST00000604339 616 ntBASIC6.3□□□□□ -1.4
SYNE1Q8NF91 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC6.3□□□□□ -1.4
SYNE1Q8NF91 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC6.3□□□□□ -1.4
SYNE1Q8NF91 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC6.3□□□□□ -1.4
SYNE1Q8NF91 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
SYNE1Q8NF91 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC6.3□□□□□ -1.4
SYNE1Q8NF91 MYB-221ENST00000527615 2381 ntTSL 5 BASIC6.3□□□□□ -1.4
SYNE1Q8NF91 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC6.3□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms