Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SLC44A3Q8N4M1 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC21.19■□□□□ 0.98
SLC44A3Q8N4M1 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SLC44A3Q8N4M1 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC21.19■□□□□ 0.98
SLC44A3Q8N4M1 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
SLC44A3Q8N4M1 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC21.19■□□□□ 0.98
SLC44A3Q8N4M1 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC21.19■□□□□ 0.98
SLC44A3Q8N4M1 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC21.19■□□□□ 0.98
SLC44A3Q8N4M1 AC113410.3-201ENST00000623366 203 ntBASIC21.19■□□□□ 0.98
SLC44A3Q8N4M1 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
SLC44A3Q8N4M1 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SLC44A3Q8N4M1 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC21.19■□□□□ 0.98
SLC44A3Q8N4M1 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
SLC44A3Q8N4M1 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
SLC44A3Q8N4M1 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC21.19■□□□□ 0.98
SLC44A3Q8N4M1 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC21.18■□□□□ 0.98
SLC44A3Q8N4M1 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SLC44A3Q8N4M1 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SLC44A3Q8N4M1 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC21.18■□□□□ 0.98
SLC44A3Q8N4M1 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
SLC44A3Q8N4M1 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
SLC44A3Q8N4M1 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC21.18■□□□□ 0.98
SLC44A3Q8N4M1 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC21.18■□□□□ 0.98
SLC44A3Q8N4M1 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SLC44A3Q8N4M1 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SLC44A3Q8N4M1 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC21.18■□□□□ 0.98
SLC44A3Q8N4M1 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC21.18■□□□□ 0.98
SLC44A3Q8N4M1 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC21.18■□□□□ 0.98
SLC44A3Q8N4M1 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SLC44A3Q8N4M1 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
SLC44A3Q8N4M1 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC21.18■□□□□ 0.98
SLC44A3Q8N4M1 AC097493.4-201ENST00000641197 219 ntBASIC21.18■□□□□ 0.98
SLC44A3Q8N4M1 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SLC44A3Q8N4M1 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SLC44A3Q8N4M1 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SLC44A3Q8N4M1 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SLC44A3Q8N4M1 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
SLC44A3Q8N4M1 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SLC44A3Q8N4M1 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC21.17■□□□□ 0.98
SLC44A3Q8N4M1 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
SLC44A3Q8N4M1 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SLC44A3Q8N4M1 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
SLC44A3Q8N4M1 KRASP1-201ENST00000407852 552 ntBASIC21.17■□□□□ 0.98
SLC44A3Q8N4M1 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SLC44A3Q8N4M1 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC21.17■□□□□ 0.98
SLC44A3Q8N4M1 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC21.17■□□□□ 0.98
SLC44A3Q8N4M1 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC21.17■□□□□ 0.98
SLC44A3Q8N4M1 AC005829.2-201ENST00000571422 1056 ntBASIC21.17■□□□□ 0.98
SLC44A3Q8N4M1 AC012306.2-201ENST00000609350 630 ntBASIC21.17■□□□□ 0.98
SLC44A3Q8N4M1 AC006557.6-201ENST00000623071 864 ntBASIC21.17■□□□□ 0.98
SLC44A3Q8N4M1 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SLC44A3Q8N4M1 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SLC44A3Q8N4M1 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
SLC44A3Q8N4M1 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC21.17■□□□□ 0.98
SLC44A3Q8N4M1 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SLC44A3Q8N4M1 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
SLC44A3Q8N4M1 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
SLC44A3Q8N4M1 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SLC44A3Q8N4M1 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SLC44A3Q8N4M1 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC21.16■□□□□ 0.98
SLC44A3Q8N4M1 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC21.16■□□□□ 0.98
SLC44A3Q8N4M1 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SLC44A3Q8N4M1 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
SLC44A3Q8N4M1 SERP1-205ENST00000487153 657 ntTSL 4 BASIC21.16■□□□□ 0.98
SLC44A3Q8N4M1 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SLC44A3Q8N4M1 TK2-213ENST00000563369 882 ntTSL 5 BASIC21.16■□□□□ 0.98
SLC44A3Q8N4M1 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC21.16■□□□□ 0.98
SLC44A3Q8N4M1 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC21.16■□□□□ 0.98
SLC44A3Q8N4M1 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
SLC44A3Q8N4M1 SNX21-213ENST00000614929 587 ntTSL 5 BASIC21.16■□□□□ 0.98
SLC44A3Q8N4M1 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SLC44A3Q8N4M1 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC21.15■□□□□ 0.98
SLC44A3Q8N4M1 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC21.15■□□□□ 0.98
SLC44A3Q8N4M1 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC21.15■□□□□ 0.98
SLC44A3Q8N4M1 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SLC44A3Q8N4M1 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC21.15■□□□□ 0.98
SLC44A3Q8N4M1 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SLC44A3Q8N4M1 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
SLC44A3Q8N4M1 RCN1P1-201ENST00000400413 996 ntBASIC21.15■□□□□ 0.98
SLC44A3Q8N4M1 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC21.15■□□□□ 0.98
SLC44A3Q8N4M1 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC21.15■□□□□ 0.98
SLC44A3Q8N4M1 AL355075.4-201ENST00000554988 638 ntBASIC21.15■□□□□ 0.98
SLC44A3Q8N4M1 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC21.15■□□□□ 0.98
SLC44A3Q8N4M1 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
SLC44A3Q8N4M1 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
SLC44A3Q8N4M1 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SLC44A3Q8N4M1 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
SLC44A3Q8N4M1 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
SLC44A3Q8N4M1 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
SLC44A3Q8N4M1 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC21.15■□□□□ 0.98
SLC44A3Q8N4M1 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.98
SLC44A3Q8N4M1 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
SLC44A3Q8N4M1 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC21.14■□□□□ 0.98
SLC44A3Q8N4M1 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
SLC44A3Q8N4M1 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SLC44A3Q8N4M1 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
SLC44A3Q8N4M1 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC21.14■□□□□ 0.97
SLC44A3Q8N4M1 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC21.14■□□□□ 0.97
SLC44A3Q8N4M1 PRKY-204ENST00000533551 1019 ntBASIC21.14■□□□□ 0.97
SLC44A3Q8N4M1 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC21.14■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms