Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
COL7A1Q02388 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
COL7A1Q02388 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
COL7A1Q02388 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC14.88□□□□□ -0.03
COL7A1Q02388 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC14.88□□□□□ -0.03
COL7A1Q02388 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC14.88□□□□□ -0.03
COL7A1Q02388 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
COL7A1Q02388 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL7A1Q02388 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
COL7A1Q02388 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL7A1Q02388 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC14.87□□□□□ -0.03
COL7A1Q02388 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL7A1Q02388 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL7A1Q02388 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL7A1Q02388 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
COL7A1Q02388 AC005521.1-201ENST00000393351 872 ntBASIC14.87□□□□□ -0.03
COL7A1Q02388 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC14.87□□□□□ -0.03
COL7A1Q02388 HES2-206ENST00000489730 730 ntTSL 2 BASIC14.87□□□□□ -0.03
COL7A1Q02388 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
COL7A1Q02388 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC14.87□□□□□ -0.03
COL7A1Q02388 Six3os1_6.1-201ENST00000620790 196 ntBASIC14.87□□□□□ -0.03
COL7A1Q02388 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
COL7A1Q02388 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL7A1Q02388 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL7A1Q02388 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL7A1Q02388 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
COL7A1Q02388 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
COL7A1Q02388 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC14.87□□□□□ -0.03
COL7A1Q02388 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL7A1Q02388 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL7A1Q02388 KRASP1-201ENST00000407852 552 ntBASIC14.87□□□□□ -0.03
COL7A1Q02388 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC14.87□□□□□ -0.03
COL7A1Q02388 AC010947.1-201ENST00000623454 693 ntBASIC14.87□□□□□ -0.03
COL7A1Q02388 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL7A1Q02388 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL7A1Q02388 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL7A1Q02388 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC14.87□□□□□ -0.03
COL7A1Q02388 AC079598.2-202ENST00000546624 1451 ntBASIC14.86□□□□□ -0.03
COL7A1Q02388 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL7A1Q02388 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC14.86□□□□□ -0.03
COL7A1Q02388 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
COL7A1Q02388 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC14.86□□□□□ -0.03
COL7A1Q02388 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL7A1Q02388 AC010542.4-201ENST00000563151 1910 ntBASIC14.86□□□□□ -0.03
COL7A1Q02388 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
COL7A1Q02388 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
COL7A1Q02388 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC14.86□□□□□ -0.03
COL7A1Q02388 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC14.86□□□□□ -0.03
COL7A1Q02388 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC14.86□□□□□ -0.03
COL7A1Q02388 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL7A1Q02388 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
COL7A1Q02388 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
COL7A1Q02388 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC14.86□□□□□ -0.03
COL7A1Q02388 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
COL7A1Q02388 PKM-204ENST00000449901 2526 ntTSL 2 BASIC14.86□□□□□ -0.03
COL7A1Q02388 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC14.86□□□□□ -0.03
COL7A1Q02388 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL7A1Q02388 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC14.86□□□□□ -0.03
COL7A1Q02388 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC14.86□□□□□ -0.03
COL7A1Q02388 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC14.86□□□□□ -0.03
COL7A1Q02388 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL7A1Q02388 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
COL7A1Q02388 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC14.86□□□□□ -0.03
COL7A1Q02388 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL7A1Q02388 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC14.85□□□□□ -0.03
COL7A1Q02388 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL7A1Q02388 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL7A1Q02388 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
COL7A1Q02388 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
COL7A1Q02388 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
COL7A1Q02388 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL7A1Q02388 AC139530.1-201ENST00000575312 1977 ntBASIC14.85□□□□□ -0.03
COL7A1Q02388 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL7A1Q02388 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL7A1Q02388 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC14.85□□□□□ -0.03
COL7A1Q02388 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC14.85□□□□□ -0.03
COL7A1Q02388 DUSP5P1-201ENST00000441325 1139 ntBASIC14.85□□□□□ -0.03
COL7A1Q02388 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC14.85□□□□□ -0.03
COL7A1Q02388 NMU-205ENST00000511469 756 ntTSL 3 BASIC14.85□□□□□ -0.03
COL7A1Q02388 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC14.85□□□□□ -0.03
COL7A1Q02388 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL7A1Q02388 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL7A1Q02388 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
COL7A1Q02388 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC14.84□□□□□ -0.03
COL7A1Q02388 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL7A1Q02388 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL7A1Q02388 MMP23A-201ENST00000234610 1017 ntBASIC14.84□□□□□ -0.03
COL7A1Q02388 TREX2-204ENST00000370212 861 ntTSL 5 BASIC14.84□□□□□ -0.03
COL7A1Q02388 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
COL7A1Q02388 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
COL7A1Q02388 AC007322.3-201ENST00000426526 701 ntBASIC14.84□□□□□ -0.03
COL7A1Q02388 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
COL7A1Q02388 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC14.84□□□□□ -0.03
COL7A1Q02388 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
COL7A1Q02388 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC14.84□□□□□ -0.03
COL7A1Q02388 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC14.84□□□□□ -0.03
COL7A1Q02388 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
COL7A1Q02388 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
COL7A1Q02388 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL7A1Q02388 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms