Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC17.45■□□□□ 0.38
PDLIM4P50479 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC17.45■□□□□ 0.38
PDLIM4P50479 CYP2T3P-201ENST00000601990 817 ntBASIC17.45■□□□□ 0.38
PDLIM4P50479 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC17.45■□□□□ 0.38
PDLIM4P50479 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC17.45■□□□□ 0.38
PDLIM4P50479 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PDLIM4P50479 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
PDLIM4P50479 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PDLIM4P50479 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PDLIM4P50479 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PDLIM4P50479 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
PDLIM4P50479 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PDLIM4P50479 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PDLIM4P50479 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PDLIM4P50479 FAM99A-202ENST00000538190 1989 ntBASIC17.44■□□□□ 0.38
PDLIM4P50479 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PDLIM4P50479 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC17.44■□□□□ 0.38
PDLIM4P50479 NARF-205ENST00000412079 1760 ntTSL 5 BASIC17.44■□□□□ 0.38
PDLIM4P50479 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PDLIM4P50479 MCRIP2P1-201ENST00000394346 511 ntBASIC17.44■□□□□ 0.38
PDLIM4P50479 AL355472.2-201ENST00000422958 438 ntBASIC17.44■□□□□ 0.38
PDLIM4P50479 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
PDLIM4P50479 AC007322.3-201ENST00000426526 701 ntBASIC17.44■□□□□ 0.38
PDLIM4P50479 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC17.44■□□□□ 0.38
PDLIM4P50479 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC17.44■□□□□ 0.38
PDLIM4P50479 ADM-205ENST00000528544 586 ntTSL 2 BASIC17.44■□□□□ 0.38
PDLIM4P50479 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC17.44■□□□□ 0.38
PDLIM4P50479 AL589743.5-201ENST00000616611 1050 ntBASIC17.44■□□□□ 0.38
PDLIM4P50479 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PDLIM4P50479 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PDLIM4P50479 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC17.44■□□□□ 0.38
PDLIM4P50479 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
PDLIM4P50479 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PDLIM4P50479 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PDLIM4P50479 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC17.43■□□□□ 0.38
PDLIM4P50479 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PDLIM4P50479 AC026471.6-201ENST00000622954 1905 ntBASIC17.43■□□□□ 0.38
PDLIM4P50479 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PDLIM4P50479 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC17.43■□□□□ 0.38
PDLIM4P50479 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
PDLIM4P50479 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PDLIM4P50479 PRORSD1P-201ENST00000295112 541 ntBASIC17.43■□□□□ 0.38
PDLIM4P50479 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PDLIM4P50479 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
PDLIM4P50479 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC17.43■□□□□ 0.38
PDLIM4P50479 AC093827.2-201ENST00000512654 315 ntBASIC17.43■□□□□ 0.38
PDLIM4P50479 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC17.43■□□□□ 0.38
PDLIM4P50479 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC17.43■□□□□ 0.38
PDLIM4P50479 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PDLIM4P50479 STX5-203ENST00000394690 1568 ntTSL 5 BASIC17.43■□□□□ 0.38
PDLIM4P50479 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PDLIM4P50479 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PDLIM4P50479 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC17.43■□□□□ 0.38
PDLIM4P50479 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PDLIM4P50479 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PDLIM4P50479 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PDLIM4P50479 KRT17P1-201ENST00000399211 1546 ntBASIC17.42■□□□□ 0.38
PDLIM4P50479 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PDLIM4P50479 TERT-206ENST00000508104 2486 ntTSL 5 BASIC17.42■□□□□ 0.38
PDLIM4P50479 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
PDLIM4P50479 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC17.42■□□□□ 0.38
PDLIM4P50479 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PDLIM4P50479 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC17.42■□□□□ 0.38
PDLIM4P50479 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC17.42■□□□□ 0.38
PDLIM4P50479 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC17.42■□□□□ 0.38
PDLIM4P50479 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
PDLIM4P50479 DET1-205ENST00000558413 583 ntTSL 4 BASIC17.42■□□□□ 0.38
PDLIM4P50479 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC17.42■□□□□ 0.38
PDLIM4P50479 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PDLIM4P50479 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PDLIM4P50479 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
PDLIM4P50479 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
PDLIM4P50479 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC17.42■□□□□ 0.38
PDLIM4P50479 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
PDLIM4P50479 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PDLIM4P50479 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
PDLIM4P50479 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC17.41■□□□□ 0.38
PDLIM4P50479 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PDLIM4P50479 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC17.41■□□□□ 0.38
PDLIM4P50479 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC17.41■□□□□ 0.38
PDLIM4P50479 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PDLIM4P50479 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
PDLIM4P50479 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PDLIM4P50479 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PDLIM4P50479 SAPCD2P1-201ENST00000395413 1184 ntBASIC17.41■□□□□ 0.38
PDLIM4P50479 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PDLIM4P50479 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC17.41■□□□□ 0.38
PDLIM4P50479 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PDLIM4P50479 MMAB-206ENST00000540016 945 ntTSL 3 BASIC17.41■□□□□ 0.38
PDLIM4P50479 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PDLIM4P50479 AC006058.3-201ENST00000606217 1069 ntBASIC17.41■□□□□ 0.38
PDLIM4P50479 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PDLIM4P50479 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PDLIM4P50479 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PDLIM4P50479 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PDLIM4P50479 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PDLIM4P50479 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PDLIM4P50479 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
PDLIM4P50479 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PDLIM4P50479 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms