Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AC080038.1-201ENST00000611274 1154 ntBASIC21.42■■□□□ 1.02
PTPN9P43378 MIR2861-201ENST00000636310 90 ntBASIC21.42■■□□□ 1.02
PTPN9P43378 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC21.42■■□□□ 1.02
PTPN9P43378 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
PTPN9P43378 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
PTPN9P43378 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PTPN9P43378 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC21.41■■□□□ 1.02
PTPN9P43378 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PTPN9P43378 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PTPN9P43378 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
PTPN9P43378 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PTPN9P43378 AC004911.1-201ENST00000416316 871 ntBASIC21.41■■□□□ 1.02
PTPN9P43378 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC21.41■■□□□ 1.02
PTPN9P43378 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
PTPN9P43378 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
PTPN9P43378 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
PTPN9P43378 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PTPN9P43378 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC21.41■■□□□ 1.02
PTPN9P43378 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
PTPN9P43378 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC21.4■■□□□ 1.02
PTPN9P43378 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
PTPN9P43378 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC21.4■■□□□ 1.02
PTPN9P43378 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
PTPN9P43378 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
PTPN9P43378 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
PTPN9P43378 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC21.4■■□□□ 1.02
PTPN9P43378 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC21.4■■□□□ 1.02
PTPN9P43378 FP700111.2-201ENST00000619190 1892 ntBASIC21.4■■□□□ 1.02
PTPN9P43378 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
PTPN9P43378 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
PTPN9P43378 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
PTPN9P43378 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
PTPN9P43378 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC21.4■■□□□ 1.02
PTPN9P43378 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
PTPN9P43378 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.02
PTPN9P43378 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
PTPN9P43378 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.02
PTPN9P43378 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.02
PTPN9P43378 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
PTPN9P43378 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.02
PTPN9P43378 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC21.39■■□□□ 1.02
PTPN9P43378 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
PTPN9P43378 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC21.39■■□□□ 1.01
PTPN9P43378 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
PTPN9P43378 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC21.39■■□□□ 1.01
PTPN9P43378 APTR-203ENST00000430801 583 ntTSL 5 BASIC21.39■■□□□ 1.01
PTPN9P43378 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC21.39■■□□□ 1.01
PTPN9P43378 RARRES2P4-201ENST00000514074 484 ntBASIC21.39■■□□□ 1.01
PTPN9P43378 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC21.39■■□□□ 1.01
PTPN9P43378 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC21.39■■□□□ 1.01
PTPN9P43378 VPS53-216ENST00000574029 585 ntTSL 4 BASIC21.39■■□□□ 1.01
PTPN9P43378 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC21.39■■□□□ 1.01
PTPN9P43378 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC21.39■■□□□ 1.01
PTPN9P43378 AC073111.5-205ENST00000641717 521 ntBASIC21.39■■□□□ 1.01
PTPN9P43378 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC21.39■■□□□ 1.01
PTPN9P43378 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC21.39■■□□□ 1.01
PTPN9P43378 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
PTPN9P43378 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC21.39■■□□□ 1.01
PTPN9P43378 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
PTPN9P43378 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.01
PTPN9P43378 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC21.39■■□□□ 1.01
PTPN9P43378 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
PTPN9P43378 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC21.38■■□□□ 1.01
PTPN9P43378 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
PTPN9P43378 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
PTPN9P43378 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
PTPN9P43378 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC21.38■■□□□ 1.01
PTPN9P43378 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
PTPN9P43378 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
PTPN9P43378 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
PTPN9P43378 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
PTPN9P43378 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
PTPN9P43378 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC21.38■■□□□ 1.01
PTPN9P43378 CYP2T1P-201ENST00000432607 1285 ntBASIC21.38■■□□□ 1.01
PTPN9P43378 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC21.38■■□□□ 1.01
PTPN9P43378 MAZ-216ENST00000616501 991 ntTSL 5 BASIC21.38■■□□□ 1.01
PTPN9P43378 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC21.38■■□□□ 1.01
PTPN9P43378 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
PTPN9P43378 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC21.38■■□□□ 1.01
PTPN9P43378 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC21.38■■□□□ 1.01
PTPN9P43378 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC21.38■■□□□ 1.01
PTPN9P43378 FEM1AP1-201ENST00000431297 1995 ntBASIC21.37■■□□□ 1.01
PTPN9P43378 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC21.37■■□□□ 1.01
PTPN9P43378 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC21.37■■□□□ 1.01
PTPN9P43378 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PTPN9P43378 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
PTPN9P43378 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PTPN9P43378 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
PTPN9P43378 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC21.37■■□□□ 1.01
PTPN9P43378 BET1L-204ENST00000410108 637 ntTSL 3 BASIC21.37■■□□□ 1.01
PTPN9P43378 CDCA4P2-201ENST00000441182 718 ntBASIC21.37■■□□□ 1.01
PTPN9P43378 DLX3-202ENST00000512495 834 ntTSL 2 BASIC21.37■■□□□ 1.01
PTPN9P43378 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC21.37■■□□□ 1.01
PTPN9P43378 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
PTPN9P43378 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
PTPN9P43378 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PTPN9P43378 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PTPN9P43378 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
PTPN9P43378 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC21.37■■□□□ 1.01
PTPN9P43378 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms