Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
MSH4O15457 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
MSH4O15457 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
MSH4O15457 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC23.18■■□□□ 1.3
MSH4O15457 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC23.18■■□□□ 1.3
MSH4O15457 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
MSH4O15457 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
MSH4O15457 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
MSH4O15457 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC23.18■■□□□ 1.3
MSH4O15457 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
MSH4O15457 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC23.18■■□□□ 1.3
MSH4O15457 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC23.18■■□□□ 1.3
MSH4O15457 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC23.18■■□□□ 1.3
MSH4O15457 AC092118.2-201ENST00000613495 667 ntBASIC23.18■■□□□ 1.3
MSH4O15457 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
MSH4O15457 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
MSH4O15457 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
MSH4O15457 GCK-205ENST00000437084 1385 ntTSL 5 BASIC23.17■■□□□ 1.3
MSH4O15457 STAC-204ENST00000457375 1366 ntTSL 2 BASIC23.17■■□□□ 1.3
MSH4O15457 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
MSH4O15457 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC23.17■■□□□ 1.3
MSH4O15457 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC23.17■■□□□ 1.3
MSH4O15457 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC23.17■■□□□ 1.3
MSH4O15457 PPP1R14BP2-201ENST00000426284 444 ntBASIC23.17■■□□□ 1.3
MSH4O15457 AC073210.2-201ENST00000430369 194 ntBASIC23.17■■□□□ 1.3
MSH4O15457 AC069152.1-201ENST00000438030 544 ntBASIC23.17■■□□□ 1.3
MSH4O15457 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC23.17■■□□□ 1.3
MSH4O15457 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC23.17■■□□□ 1.3
MSH4O15457 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC23.17■■□□□ 1.3
MSH4O15457 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC23.17■■□□□ 1.3
MSH4O15457 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC23.17■■□□□ 1.3
MSH4O15457 AL137060.1-201ENST00000618151 2648 ntBASIC23.17■■□□□ 1.3
MSH4O15457 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
MSH4O15457 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC23.17■■□□□ 1.3
MSH4O15457 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
MSH4O15457 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC23.16■■□□□ 1.3
MSH4O15457 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
MSH4O15457 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
MSH4O15457 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC23.16■■□□□ 1.3
MSH4O15457 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC23.16■■□□□ 1.3
MSH4O15457 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
MSH4O15457 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC23.16■■□□□ 1.3
MSH4O15457 KRT18P68-201ENST00000392293 1000 ntBASIC23.16■■□□□ 1.3
MSH4O15457 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
MSH4O15457 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
MSH4O15457 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
MSH4O15457 MIR4758-201ENST00000577688 71 ntBASIC23.16■■□□□ 1.3
MSH4O15457 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC23.16■■□□□ 1.3
MSH4O15457 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC23.16■■□□□ 1.3
MSH4O15457 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
MSH4O15457 AC027702.1-201ENST00000563810 1770 ntBASIC23.16■■□□□ 1.3
MSH4O15457 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC23.16■■□□□ 1.3
MSH4O15457 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
MSH4O15457 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC23.15■■□□□ 1.3
MSH4O15457 ERF-202ENST00000440177 2032 ntTSL 2 BASIC23.15■■□□□ 1.3
MSH4O15457 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
MSH4O15457 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
MSH4O15457 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
MSH4O15457 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC23.15■■□□□ 1.3
MSH4O15457 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
MSH4O15457 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC23.15■■□□□ 1.3
MSH4O15457 AC087633.2-202ENST00000565166 1439 ntBASIC23.15■■□□□ 1.3
MSH4O15457 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC23.14■■□□□ 1.3
MSH4O15457 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
MSH4O15457 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.29
MSH4O15457 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.29
MSH4O15457 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC23.14■■□□□ 1.29
MSH4O15457 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
MSH4O15457 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC23.14■■□□□ 1.29
MSH4O15457 APTR-205ENST00000447009 902 ntTSL 2 BASIC23.14■■□□□ 1.29
MSH4O15457 KLF13-207ENST00000560473 489 ntTSL 3 BASIC23.14■■□□□ 1.29
MSH4O15457 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC23.14■■□□□ 1.29
MSH4O15457 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC23.14■■□□□ 1.29
MSH4O15457 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC23.14■■□□□ 1.29
MSH4O15457 AC133041.1-202ENST00000642053 222 ntBASIC23.14■■□□□ 1.29
MSH4O15457 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC23.14■■□□□ 1.29
MSH4O15457 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC23.14■■□□□ 1.29
MSH4O15457 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
MSH4O15457 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC23.14■■□□□ 1.29
MSH4O15457 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC23.13■■□□□ 1.29
MSH4O15457 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC23.13■■□□□ 1.29
MSH4O15457 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC23.13■■□□□ 1.29
MSH4O15457 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC23.13■■□□□ 1.29
MSH4O15457 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC23.13■■□□□ 1.29
MSH4O15457 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC23.13■■□□□ 1.29
MSH4O15457 LSM12P1-201ENST00000411836 588 ntBASIC23.13■■□□□ 1.29
MSH4O15457 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC23.13■■□□□ 1.29
MSH4O15457 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC23.13■■□□□ 1.29
MSH4O15457 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC23.13■■□□□ 1.29
MSH4O15457 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC23.13■■□□□ 1.29
MSH4O15457 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
MSH4O15457 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
MSH4O15457 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
MSH4O15457 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC23.12■■□□□ 1.29
MSH4O15457 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
MSH4O15457 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC23.12■■□□□ 1.29
MSH4O15457 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC23.12■■□□□ 1.29
MSH4O15457 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
MSH4O15457 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC23.12■■□□□ 1.29
MSH4O15457 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC23.12■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 117.9 ms