Protein–RNA interactions for Protein: O14562

UBFD1, Ubiquitin domain-containing protein UBFD1, humanhuman

Known RBP Predictions only

Length 309 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1O14562 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC19.98■□□□□ 0.79
UBFD1O14562 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC19.98■□□□□ 0.79
UBFD1O14562 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
UBFD1O14562 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC19.98■□□□□ 0.79
UBFD1O14562 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
UBFD1O14562 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
UBFD1O14562 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
UBFD1O14562 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
UBFD1O14562 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
UBFD1O14562 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
UBFD1O14562 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
UBFD1O14562 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
UBFD1O14562 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
UBFD1O14562 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC19.97■□□□□ 0.79
UBFD1O14562 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
UBFD1O14562 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC19.97■□□□□ 0.79
UBFD1O14562 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
UBFD1O14562 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
UBFD1O14562 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
UBFD1O14562 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
UBFD1O14562 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
UBFD1O14562 KRT16P2-201ENST00000414673 1423 ntBASIC19.97■□□□□ 0.79
UBFD1O14562 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
UBFD1O14562 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC19.97■□□□□ 0.79
UBFD1O14562 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC19.97■□□□□ 0.79
UBFD1O14562 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
UBFD1O14562 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC19.97■□□□□ 0.79
UBFD1O14562 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC19.97■□□□□ 0.79
UBFD1O14562 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
UBFD1O14562 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC19.97■□□□□ 0.79
UBFD1O14562 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
UBFD1O14562 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
UBFD1O14562 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
UBFD1O14562 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
UBFD1O14562 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC19.96■□□□□ 0.79
UBFD1O14562 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC19.96■□□□□ 0.79
UBFD1O14562 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
UBFD1O14562 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC19.96■□□□□ 0.79
UBFD1O14562 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
UBFD1O14562 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
UBFD1O14562 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
UBFD1O14562 AC027612.3-201ENST00000413684 1047 ntBASIC19.96■□□□□ 0.79
UBFD1O14562 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
UBFD1O14562 AC010141.2-201ENST00000452426 721 ntBASIC19.96■□□□□ 0.79
UBFD1O14562 AC105265.2-201ENST00000467189 838 ntBASIC19.96■□□□□ 0.79
UBFD1O14562 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
UBFD1O14562 AC005837.3-201ENST00000612163 286 ntBASIC19.96■□□□□ 0.79
UBFD1O14562 RALB-208ENST00000631312 311 ntTSL 5 BASIC19.96■□□□□ 0.79
UBFD1O14562 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
UBFD1O14562 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC19.96■□□□□ 0.79
UBFD1O14562 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
UBFD1O14562 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
UBFD1O14562 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
UBFD1O14562 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC19.96■□□□□ 0.79
UBFD1O14562 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
UBFD1O14562 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC19.95■□□□□ 0.78
UBFD1O14562 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC19.95■□□□□ 0.78
UBFD1O14562 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC19.95■□□□□ 0.78
UBFD1O14562 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
UBFD1O14562 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
UBFD1O14562 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC19.95■□□□□ 0.78
UBFD1O14562 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
UBFD1O14562 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC19.95■□□□□ 0.78
UBFD1O14562 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC19.95■□□□□ 0.78
UBFD1O14562 BID-204ENST00000399767 2129 ntTSL 2 BASIC19.95■□□□□ 0.78
UBFD1O14562 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
UBFD1O14562 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC19.95■□□□□ 0.78
UBFD1O14562 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC19.95■□□□□ 0.78
UBFD1O14562 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
UBFD1O14562 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
UBFD1O14562 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
UBFD1O14562 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC19.95■□□□□ 0.78
UBFD1O14562 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
UBFD1O14562 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC19.95■□□□□ 0.78
UBFD1O14562 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
UBFD1O14562 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
UBFD1O14562 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
UBFD1O14562 AC092720.2-201ENST00000602388 1665 ntBASIC19.94■□□□□ 0.78
UBFD1O14562 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
UBFD1O14562 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
UBFD1O14562 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
UBFD1O14562 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
UBFD1O14562 SLC7A5P2-201ENST00000553010 536 ntBASIC19.94■□□□□ 0.78
UBFD1O14562 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC19.94■□□□□ 0.78
UBFD1O14562 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
UBFD1O14562 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
UBFD1O14562 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
UBFD1O14562 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC19.94■□□□□ 0.78
UBFD1O14562 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
UBFD1O14562 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
UBFD1O14562 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
UBFD1O14562 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
UBFD1O14562 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC19.93■□□□□ 0.78
UBFD1O14562 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC19.93■□□□□ 0.78
UBFD1O14562 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC19.93■□□□□ 0.78
UBFD1O14562 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
UBFD1O14562 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
UBFD1O14562 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
UBFD1O14562 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC19.93■□□□□ 0.78
UBFD1O14562 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC19.93■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms